Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0020g00250.t01 | Wine grape | nucleus | 24.83 | 20.73 |
| VIT_05s0020g00320.t01 | Wine grape | cytosol | 7.05 | 5.61 |
| PGSC0003DMT400003105 | Potato | plastid | 1.68 | 0.93 |
| Solyc01g057840.2.1 | Tomato | nucleus | 1.68 | 0.87 |
| VIT_05s0077g00460.t01 | Wine grape | cytosol | 2.68 | 0.71 |
| VIT_05s0020g00170.t01 | Wine grape | nucleus | 2.01 | 0.7 |
| VIT_05s0020g00290.t01 | Wine grape | endoplasmic reticulum | 0.0 | 0.0 |
| VIT_05s0020g00310.t01 | Wine grape | cytosol, nucleus | 0.0 | 0.0 |
| VIT_15s0045g00300.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_05s0020g00120 | EMBL:FN595749 | EnsemblPlants:VIT_05s0020g00120.t01 | EnsemblPlantsGene:VIT_05s0020g00120 | PANTHER:PTHR15239 | PANTHER:PTHR15239:SF6 |
| ProteinID:CCB50253 | ProteinID:CCB50253.1 | SEG:seg | UniParc:UPI00021081AE | UniProt:F6HDX8 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5:+:2014665..2018185
Molecular Weight (calculated)
33815.3 Da
IEP (calculated)
5.881
GRAVY (calculated)
-0.873
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKRHFHVDK VEVDLALSAH ANARRWYEQK KRQENKQEKT IIAHEKAFKA AEKKSCVQLS QVCHSQAWDS KIVTSAWWVY PHQVSKTAST GEYLTVGSFM
101: IRGKNFLPPH PLMMGFGLLF CLDESSLGSH LNDRRVRGEE EGAQDFEENE SLKGNSDSES EKEETDEKRT AESKSIMDPS THQPILEGFS EISSAHNELT
201: TSNVGSINLP EVPLEERNML NGNDSEHIDD ISGIHVSSVN PQLEDFIDRA LELGSNTASG KKYALETSQV DLEEHNHEDR KAKVREKPYT SYQSQRKK
101: IRGKNFLPPH PLMMGFGLLF CLDESSLGSH LNDRRVRGEE EGAQDFEENE SLKGNSDSES EKEETDEKRT AESKSIMDPS THQPILEGFS EISSAHNELT
201: TSNVGSINLP EVPLEERNML NGNDSEHIDD ISGIHVSSVN PQLEDFIDRA LELGSNTASG KKYALETSQV DLEEHNHEDR KAKVREKPYT SYQSQRKK
0001: MVKVRMNTAD VAAEVKCLKR LIGMRCSNVY DISPKTYMFK LLNSSGITES GESEKVLLLM ESGVRLHTTA YVRDKSNTPS GFTLKLRKHI RTRRLEDVRQ
0101: LGYDRIIVFQ FGLGANAHYV ILELYAQGNI ILTDSEYMIM TLLRSHRDDN KGFAIMSRHR YPIEICRVFE RTTVSKLQES LTAFVLKDHD AKQIEPKEQN
0201: GGKKGGKSND STGAKQYTLK NILGDALGYG PQLSEHIILD AGLVPTTKLS EDKKLDDNEI QLLVQAVIVF EDWLEDIING QKVPEGYILM QKQILANDTT
0301: SESGGVKKMY DEFCSILLNQ FKSRVYEKFE TFDAALDEFY SKIESQRSEQ QQKAKEDSAS LKLNKIRQDQ ENRVQILKKE VNHCVNMAEL IEYNLEDVDA
0401: AILAVRVALA KGMGWDDLAR MVKEEKKLGN PVAGVIDRLY LEKNCMTLLL CNNLDEMDDD EKTVPVEKVE VDLSLSAHGN ARRWYEMKKK QETKQEKTVS
0501: AHEKAFRAAE KKTRHQLSQE KVVATISHMR KVHWFEKFNW FISSENYLVI SGRDAQQNEM IVKRYMSKGD LYVHAELHGA SSTVIKNHKP EQNVPPLTLN
0601: QAGCFTVCHS QAWDSKIVTS AWWVYPHQVT KTAPTGEYLT VGSFMIRGKK NFLPPHPLIM GFGLLFRLDE SSLGAHLNER RVRGEEEGMN DVVMETHAPD
0701: EHSDTESENE AVNEVVSASG EVDLQESSTA LSQDTSSLDM SSSGITEENV ASATSQLEDL LDRTLGLGAA TVAGKKDTIE TSKDDMEEKM KQEEKNAVVR
0801: DKPYMSKAER RKLKMGQSGN TAADGNTGQE KQQRKEKDVS SLSQATKSIP DNKPAGEKVS RGQRGKLKKM KEKYADQDED ERKIRMALLA SSGKPQKTDV
0901: ESQNAKTAVT EVKKPSEETD DAVKICYRCK KVGHLARDCH GKETSDMDKV VMEEDDIHEV GDEEKEKLID VDYLTGNPLP TDILLYAVPV CGPYNALQSY
1001: KYRVKAIPGS MKKGKAAKTA MNLFTHMSEA SVREKELMKA CTDPELMAAL VGNVKITAAG LTQLKQKQKK GKKSGKQQHS
0101: LGYDRIIVFQ FGLGANAHYV ILELYAQGNI ILTDSEYMIM TLLRSHRDDN KGFAIMSRHR YPIEICRVFE RTTVSKLQES LTAFVLKDHD AKQIEPKEQN
0201: GGKKGGKSND STGAKQYTLK NILGDALGYG PQLSEHIILD AGLVPTTKLS EDKKLDDNEI QLLVQAVIVF EDWLEDIING QKVPEGYILM QKQILANDTT
0301: SESGGVKKMY DEFCSILLNQ FKSRVYEKFE TFDAALDEFY SKIESQRSEQ QQKAKEDSAS LKLNKIRQDQ ENRVQILKKE VNHCVNMAEL IEYNLEDVDA
0401: AILAVRVALA KGMGWDDLAR MVKEEKKLGN PVAGVIDRLY LEKNCMTLLL CNNLDEMDDD EKTVPVEKVE VDLSLSAHGN ARRWYEMKKK QETKQEKTVS
0501: AHEKAFRAAE KKTRHQLSQE KVVATISHMR KVHWFEKFNW FISSENYLVI SGRDAQQNEM IVKRYMSKGD LYVHAELHGA SSTVIKNHKP EQNVPPLTLN
0601: QAGCFTVCHS QAWDSKIVTS AWWVYPHQVT KTAPTGEYLT VGSFMIRGKK NFLPPHPLIM GFGLLFRLDE SSLGAHLNER RVRGEEEGMN DVVMETHAPD
0701: EHSDTESENE AVNEVVSASG EVDLQESSTA LSQDTSSLDM SSSGITEENV ASATSQLEDL LDRTLGLGAA TVAGKKDTIE TSKDDMEEKM KQEEKNAVVR
0801: DKPYMSKAER RKLKMGQSGN TAADGNTGQE KQQRKEKDVS SLSQATKSIP DNKPAGEKVS RGQRGKLKKM KEKYADQDED ERKIRMALLA SSGKPQKTDV
0901: ESQNAKTAVT EVKKPSEETD DAVKICYRCK KVGHLARDCH GKETSDMDKV VMEEDDIHEV GDEEKEKLID VDYLTGNPLP TDILLYAVPV CGPYNALQSY
1001: KYRVKAIPGS MKKGKAAKTA MNLFTHMSEA SVREKELMKA CTDPELMAAL VGNVKITAAG LTQLKQKQKK GKKSGKQQHS
Arabidopsis Description
emb1441Gb [Source:UniProtKB/TrEMBL;Acc:Q9LTX7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.