Factsheet for Zm00001d042287_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d021987_P001
Zm00001d033309_P003
Zm00001d040357_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	Zm00001d021987_P001	AT1G04510.1	19629177
AT1G09770.1	Zm00001d040357_P001	AT3G18165.1	17575050
AT1G09770.1	Zm00001d033309_P003	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34025	Sorghum	nucleus	91.57	86.16
EES15997	Sorghum	nucleus	91.14	85.5
CDY47227	Canola	nucleus	20.86	81.78
Bra027160.1-P	Field mustard	nucleus	20.54	80.51
Os04t0348300-01	Rice	nucleus	84.54	80.45
CDY53058	Canola	nucleus	20.43	80.08
TraesCS5D01G460800.1	Wheat	nucleus	83.89	76.6
TraesCS5B01G459200.1	Wheat	nucleus	84.11	76.05
TraesCS5A01G450800.1	Wheat	nucleus	83.68	75.44
TraesCS5D01G314000.1	Wheat	nucleus	84.76	74.03
HORVU5Hr1G108630.3	Barley	nucleus	84.54	73.91
HORVU5Hr1G080010.3	Barley	nucleus	84.65	73.18
TraesCS5A01G307100.1	Wheat	nucleus	84.43	72.25
TraesCS5B01G307500.2	Wheat	nucleus	84.22	71.86
AT1G09770.1	Thale cress	nucleus	64.32	70.5
Bra019993.1-P	Field mustard	nucleus	64.11	70.26
CDX93482	Canola	nucleus	63.89	69.94
CDX94951	Canola	nucleus	63.78	69.82
CDY31065	Canola	nucleus	63.78	69.66
Bra030798.1-P	Field mustard	nucleus	63.78	69.66
CDY20673	Canola	nucleus	63.35	69.19
KRH34143	Soybean	nucleus	67.68	65.07
KRG92639	Soybean	nucleus	67.46	64.8
Solyc04g009950.2.1	Tomato	nucleus	65.84	61.7
PGSC0003DMT400029953	Potato	nucleus	65.41	61.36
VIT_14s0036g00510.t01	Wine grape	nucleus	64.76	60.63
GSMUA_Achr9P23340_001	Banana	nucleus	72.43	59.45

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	UniProt:A0A1D6N2M1	InterPro:Cdc5p/Cef1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009870
GO:GO:0009987	GO:GO:0010204	GO:GO:0042742	GO:GO:0050832	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	ProteinID:ONM34962.1	PFAM:PF11831	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF559	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002210E91	EnsemblPlantsGene:Zm00001d042287
EnsemblPlants:Zm00001d042287_P001	EnsemblPlants:Zm00001d042287_T001	SEG:seg	:	:	:

Description

myb transcription factor2CDC5 protein

Coordinates

chr3:+:159074669..159084170

Molecular Weight (calculated)

104569.0 Da

IEP (calculated)

5.084

GRAVY (calculated)

-0.995

Length

925 amino acids

Sequence
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACAKD ENYEANDDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDTRHR
201: KRKRKGIDYN AEIPFEKRPP SGFYDTVGED RPPEHVQFPT TIEELEGKRR ADIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT KRSKLMLPPP
301: QISDHELEEI AKMGSAGDPA LADELGEGST ATRTLLASYS QTPRLGMTPL RTPQRTPAGK GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR
401: KKEIQTPNPM ATPLASPGPG ITPRISMTPS REGHSFGLTP KATPLRDELN INEVEMQDNT KLELRRQAEL RKSLRSGFAS IPQPKNEYQI VMPPITEDEK
501: EEAEEKIEED MSDRLARERA EEQARHEALL RKRSKVLQRS LPRPPAVSVE IIRQSLIRSG ESRSRSTFMP PTSLEQADEL INEELLRLLE HDNAKYPLDE
601: KTQKEKKKGS KRQQNGGPLV PEIDDFDEDE LKEASSMVEE EIQYLRVAMG HENESFEDFV KAHDACQDDL MFFPTSNSYG LASVAGNADK ISALQNEFET
701: VKKRMDDEAK KASRLEQKIK LLTQGYQIRA GKLWSQVQDT FKQMDTAATE LECFQELQKQ EHLAASYRIQ NLSEEVSKQK ALERTLQSRY GELVSGFQRI
801: QEQVEEHKRQ LKVQEAVEAE SHAQEEEAAA SNHAAAEEED ERKEDDERKE EDGRKSLSSE EKPQQTSTAT DEEPAGSKGT TEDQMDVDSG NGEGGVVGPV
901: PPAPDTEGGN DEVSVQEISE AQPLP

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.