Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00531 | Sorghum | cytosol | 63.99 | 90.94 |
| TraesCS3D01G186100.1 | Wheat | cytosol | 56.23 | 79.3 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 56.23 | 79.3 |
| TraesCS3A01G181200.1 | Wheat | nucleus | 55.96 | 78.91 |
| HORVU3Hr1G037080.1 | Barley | plastid | 55.12 | 66.78 |
| Solyc03g119010.2.1 | Tomato | nucleus | 41.55 | 62.5 |
| PGSC0003DMT400014424 | Potato | nucleus | 41.83 | 60.16 |
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 40.72 | 58.1 |
| KRH41788 | Soybean | nucleus | 40.44 | 57.94 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 32.96 | 57.49 |
| AT3G18165.1 | Thale cress | cytosol | 38.78 | 55.34 |
| CDX95551 | Canola | cytosol | 38.78 | 55.34 |
| Bra021297.1-P | Field mustard | cytosol | 38.5 | 54.94 |
| CDY24431 | Canola | nucleus | 38.23 | 54.55 |
| CDX92209 | Canola | nucleus | 38.23 | 54.55 |
| Bra022288.1-P | Field mustard | nucleus | 38.23 | 54.55 |
| CDY24603 | Canola | cytosol | 11.91 | 48.86 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 25.21 | 45.05 |
| CDY18500 | Canola | cytosol | 38.5 | 23.21 |
Protein Annotations
| EntrezGene:100284614 | MapMan:16.4.5.1.1 | Gene3D:3.40.50.1820 | UniProt:A0A1D6MQC3 | InterPro:AB_hydrolase | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009870 | GO:GO:0009987 | GO:GO:0010204 | GO:GO:0042742 |
| GO:GO:0050832 | InterPro:IPR029058 | ProteinID:ONM31213.1 | PFAM:PF05700 | PANTHER:PTHR13296 | InterPro:SPF27 |
| SUPFAM:SSF53474 | UniParc:UPI000844052A | EnsemblPlantsGene:Zm00001d040357 | EnsemblPlants:Zm00001d040357_P001 | EnsemblPlants:Zm00001d040357_T001 | SEG:seg |
Description
Pre-mRNA-splicing factor SPF27 homolog
Coordinates
chr3:-:39649104..39653644
Molecular Weight (calculated)
41095.3 Da
IEP (calculated)
6.623
GRAVY (calculated)
-0.443
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSATREVL MLEAPPPSDP AAGPWRAVPD AEAIDALPYI DGDYGDAAVK REVDRLVEEE MRRGKRKPAD FLRDLPPVPT AGFENHPMLS KEYERVRAGK
101: PPFMLDMSRY GLEPPPMNKR NDVGAWRQAL RNAQSQLQHQ IIRIENLELM LKYGVDVWKL QNRQMESVLS RMQKMAVEYN ERIENVNRER KFHQQNTGGQ
201: LHALKMEWQE LCQKNIAIQA ACVDLQNHID QLKLEAKELR YLDNPAFPSH LCCLFVPSGS GVHDWLPLII YFHGGGYVLF RVAYDLLYDT CMALTATTLA
301: VVVSVGECPW TTTQEPTHKH HEDLRYRGGK EEATLHLSLA AGRFISHCDY LSCNCHMGQS V
101: PPFMLDMSRY GLEPPPMNKR NDVGAWRQAL RNAQSQLQHQ IIRIENLELM LKYGVDVWKL QNRQMESVLS RMQKMAVEYN ERIENVNRER KFHQQNTGGQ
201: LHALKMEWQE LCQKNIAIQA ACVDLQNHID QLKLEAKELR YLDNPAFPSH LCCLFVPSGS GVHDWLPLII YFHGGGYVLF RVAYDLLYDT CMALTATTLA
301: VVVSVGECPW TTTQEPTHKH HEDLRYRGGK EEATLHLSLA AGRFISHCDY LSCNCHMGQS V
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.