Factsheet for Zm00001d042413_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007811_P001	Maize	cytosol	17.65	65.31
Zm00001d020905_P001	Maize	nucleus	26.65	54.31
Zm00001d017131_P001	Maize	nucleus	23.53	41.16
CDX92274	Canola	nucleus	19.3	39.33
CDX99314	Canola	nucleus	19.12	38.95
KRH15273	Soybean	nucleus	19.67	35.79
AT3G18790.1	Thale cress	nucleus	19.67	35.67
KRH38151	Soybean	endoplasmic reticulum	19.49	35.45
Bra022357.1-P	Field mustard	nucleus	19.3	35.35
KRH55159	Soybean	nucleus	19.3	34.88
VIT_04s0044g00540.t01	Wine grape	nucleus	18.93	34.56
PGSC0003DMT400017978	Potato	nucleus	18.75	34.11
Solyc05g051070.2.1	Tomato	nucleus	18.57	32.58
CDX95495	Canola	nucleus	3.86	25.61
GSMUA_Achr9P16220_001	Banana	cytosol	19.3	19.55
Bra037559.1-P	Field mustard	cytosol	3.68	13.16
CDY18546	Canola	cytosol	3.49	12.93

Protein Annotations

Gene3D:1.10.287.660	MapMan:16.4.5.2.4	UniProt:A0A1D6N3L4	ncoils:Coil	GO:GO:0000350	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012
InterPro:Isy1	InterPro:Isy1_sf	ProteinID:ONM35282.1	PFAM:PF06246	PANTHER:PTHR13021	SUPFAM:SSF140102
UniParc:UPI0008449F5D	EnsemblPlantsGene:Zm00001d042413	EnsemblPlants:Zm00001d042413_P001	EnsemblPlants:Zm00001d042413_T001	SEG:seg	:

Description

Pre-mRNA-splicing factor isy-1

Coordinates

chr3:-:166290735..166380382

Molecular Weight (calculated)

59439.1 Da

IEP (calculated)

11.001

GRAVY (calculated)

-0.708

Length

544 amino acids

Sequence
(BLAST)

001: MADQQHLKLD DDGLEVHLLV DRGAHISTTS SSSSGVDMRS KFSVGGGGWG EIDDVHAGIS DQRQIYGSLL RIFVGFSKDR RLSTREKQVR AICQTRLHQH
101: IKENAAYWKQ RGYQKAIRDG DANTAFHHAH ATQRSRSNHI SKVTVGEQEL YSHESKMAAL TNHVRSIMGQ TGTSTWSFDV NELYDGRPSA SDNLTAPFSE
201: KEAVAVIAPA PENHAPATRN PANRPPTPAA RPPYSSPPQT APNPARPASV FIAAAPHANA SARPPSGILA AANSSPTTHA ENPARTPRTP ARDSRKARQP
301: PASSLRPLHV PREPPAQALR APALPRLRVP LAEIQNEGLG EHRLRDLNDE INKLLRERGH WERHIVELNG RDYSRSSNAP LMTDLDGNIV AIPNPSGRGP
401: GYRYFGAARK LPGVQELFDK PPEMRKRCTR YKIHKRINAQ GRQAPDVALL QLQGPGRAAA GGIAGGPRGP PRRCWYFFNR SASRPMLLHA SAQATLAHRH
501: RRPQTCARRA ADLGASVASL LCPPVAHPQT SADRRPPSGR PLDA

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.