Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022357.1-P | Field mustard | nucleus | 86.67 | 87.54 |
| CDY18546 | Canola | cytosol | 40.33 | 82.31 |
| Bra037559.1-P | Field mustard | cytosol | 41.67 | 82.24 |
| KRH15273 | Soybean | nucleus | 80.0 | 80.27 |
| KRH38151 | Soybean | endoplasmic reticulum | 79.67 | 79.93 |
| VIT_04s0044g00540.t01 | Wine grape | nucleus | 79.33 | 79.87 |
| KRH55159 | Soybean | nucleus | 79.67 | 79.4 |
| CDX99314 | Canola | nucleus | 70.67 | 79.4 |
| CDX92274 | Canola | nucleus | 70.33 | 79.03 |
| PGSC0003DMT400017978 | Potato | nucleus | 78.33 | 78.6 |
| Solyc05g051070.2.1 | Tomato | nucleus | 78.67 | 76.13 |
| HORVU6Hr1G013160.1 | Barley | cytosol | 71.33 | 70.86 |
| HORVU6Hr1G013130.1 | Barley | cytosol | 71.0 | 70.53 |
| TraesCS6D01G197000.1 | Wheat | nucleus | 73.0 | 70.42 |
| TraesCS6B01G244300.1 | Wheat | nucleus | 73.0 | 70.42 |
| EES07109 | Sorghum | nucleus | 72.33 | 70.23 |
| Zm00001d017131_P001 | Maize | nucleus | 72.67 | 70.1 |
| TraesCS6A01G214300.1 | Wheat | nucleus | 72.0 | 69.45 |
| TraesCS3A01G532300.1 | Wheat | nucleus | 51.0 | 69.23 |
| Os02t0602500-02 | Rice | nucleus | 71.67 | 69.13 |
| HORVU6Hr1G009190.1 | Barley | cytosol | 70.67 | 67.95 |
| TraesCS3B01G609900.1 | Wheat | nucleus | 60.33 | 63.51 |
| HORVU6Hr1G054640.2 | Barley | mitochondrion | 73.0 | 61.52 |
| CDX95495 | Canola | nucleus | 14.67 | 53.66 |
| GSMUA_Achr9P16220_001 | Banana | cytosol | 70.67 | 39.48 |
| HORVU0Hr1G015130.1 | Barley | cytosol | 38.33 | 37.95 |
| Zm00001d020905_P001 | Maize | nucleus | 33.33 | 37.45 |
| Zm00001d007811_P001 | Maize | cytosol | 18.33 | 37.41 |
| Zm00001d042413_P001 | Maize | cytosol | 35.67 | 19.67 |
Protein Annotations
| Gene3D:1.10.287.660 | MapMan:16.4.5.2.4 | EntrezGene:821412 | UniProt:A0A178VBM6 | ProteinID:AEE76149.1 | EMBL:AK118557 |
| EMBL:AK318759 | ArrayExpress:AT3G18790 | EnsemblPlantsGene:AT3G18790 | RefSeq:AT3G18790 | TAIR:AT3G18790 | RefSeq:AT3G18790-TAIR-G |
| EnsemblPlants:AT3G18790.1 | TAIR:AT3G18790.1 | EMBL:AY065003 | EMBL:AY090274 | Unigene:At.28288 | ProteinID:BAB01807.1 |
| ncoils:Coil | GO:GO:0000350 | GO:GO:0000384 | GO:GO:0000389 | GO:GO:0000974 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0071012 | GO:GO:0071013 | GO:GO:0071014 | GO:GO:0071020 |
| InterPro:Helix_hairpin_bin_sf | InterPro:IPR029012 | InterPro:Isy1 | InterPro:Isy1_sf | RefSeq:NP_188509.1 | ProteinID:OAP03599.1 |
| PFAM:PF06246 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR13021 | UniProt:Q9LS97 | SUPFAM:SSF140102 | UniParc:UPI00000AC3D3 | SEG:seg |
Description
AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
Coordinates
chr3:+:6477661..6479582
Molecular Weight (calculated)
35379.0 Da
IEP (calculated)
6.823
GRAVY (calculated)
-1.138
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.