CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15273	Soybean	nucleus	95.68	96.32
KRH38151	Soybean	endoplasmic reticulum	95.35	95.99
VIT_04s0044g00540.t01	Wine grape	nucleus	80.73	81.54
AT3G18790.1	Thale cress	nucleus	79.4	79.67
PGSC0003DMT400017978	Potato	nucleus	78.74	79.26
Bra022357.1-P	Field mustard	nucleus	76.74	77.78
Solyc05g051070.2.1	Tomato	nucleus	78.41	76.13
CDX92274	Canola	nucleus	65.78	74.16
CDX99314	Canola	nucleus	65.78	74.16
Zm00001d017131_P001	Maize	nucleus	73.42	71.06
EES07109	Sorghum	nucleus	72.76	70.87
TraesCS6D01G197000.1	Wheat	nucleus	72.76	70.42
TraesCS6B01G244300.1	Wheat	nucleus	72.76	70.42
Bra037559.1-P	Field mustard	cytosol	35.55	70.39
HORVU6Hr1G013160.1	Barley	cytosol	69.77	69.54
TraesCS6A01G214300.1	Wheat	nucleus	71.76	69.45
HORVU6Hr1G013130.1	Barley	cytosol	69.44	69.21
Os02t0602500-02	Rice	nucleus	71.1	68.81
CDY18546	Canola	cytosol	33.55	68.71
TraesCS3A01G532300.1	Wheat	nucleus	49.83	67.87
HORVU6Hr1G009190.1	Barley	cytosol	69.44	66.99
TraesCS3B01G609900.1	Wheat	nucleus	59.8	63.16
HORVU6Hr1G054640.2	Barley	mitochondrion	73.09	61.8
CDX95495	Canola	nucleus	14.29	52.44
Zm00001d007811_P001	Maize	cytosol	20.27	41.5
GSMUA_Achr9P16220_001	Banana	cytosol	69.1	38.73
Zm00001d020905_P001	Maize	nucleus	34.22	38.58
HORVU0Hr1G015130.1	Barley	cytosol	37.54	37.29
Zm00001d042413_P001	Maize	cytosol	34.88	19.3

Protein Annotations

Gene3D:1.10.287.660	MapMan:16.4.5.2.4	UniProt:A0A0R0JL42	EMBL:ACUP02003915	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G234100
GO:GO:0000350	GO:GO:0000384	GO:GO:0000389	GO:GO:0000974	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071012	GO:GO:0071013	GO:GO:0071014
GO:GO:0071020	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012	InterPro:Isy1	InterPro:Isy1_sf	EnsemblPlants:KRH55159
ProteinID:KRH55159	ProteinID:KRH55159.1	PFAM:PF06246	PANTHER:PTHR13021	SUPFAM:SSF140102	UniParc:UPI0006ED613B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:37619379..37620891

Molecular Weight (calculated)

35546.1 Da

IEP (calculated)

5.951

GRAVY (calculated)

-1.153

Length

301 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRFITMKA EEKKKPKDRR PFLASECRDL SEADKWRQQI MREIGRKVAE IQNEGLGEHR LRDLNDEINK LIREKSHWER RIVELGGPNY
101: AKHSAKMTDL DGNIVDVPNP GGRGPGYRYF GAAKKLPGVK ELFEKPPDLR KRRTRYDIYK RIDASYYGYR DEEDGVLERL EGPAEEAMRW EAAEEWRRLD
201: EVRKEARKGV LSGEVAEVTA VAREVLKEEE EEVVEEERAR EREKEDERER REFVVHVPLP DEKEIERRVL EKKKKDLLSR YASEGLVEEQ IEAKDMLNIQ
301: R

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.