CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92274	Canola	nucleus	98.13	98.13
Bra022357.1-P	Field mustard	nucleus	88.76	79.8
AT3G18790.1	Thale cress	nucleus	79.4	70.67
TraesCS3A01G532300.1	Wheat	nucleus	56.18	67.87
KRH15273	Soybean	nucleus	73.78	65.89
KRH55159	Soybean	nucleus	74.16	65.78
KRH38151	Soybean	endoplasmic reticulum	73.41	65.55
PGSC0003DMT400017978	Potato	nucleus	70.41	62.88
VIT_04s0044g00540.t01	Wine grape	nucleus	70.04	62.75
Solyc05g051070.2.1	Tomato	nucleus	70.79	60.97
CDY18546	Canola	cytosol	33.33	60.54
CDX95495	Canola	nucleus	17.98	58.54
TraesCS6D01G197000.1	Wheat	nucleus	67.04	57.56
TraesCS6B01G244300.1	Wheat	nucleus	67.04	57.56
EES07109	Sorghum	nucleus	66.29	57.28
Zm00001d017131_P001	Maize	nucleus	66.67	57.23
TraesCS6A01G214300.1	Wheat	nucleus	66.67	57.23
Os02t0602500-02	Rice	nucleus	66.67	57.23
HORVU6Hr1G013160.1	Barley	cytosol	64.42	56.95
HORVU6Hr1G013130.1	Barley	cytosol	64.04	56.62
HORVU6Hr1G009190.1	Barley	cytosol	64.42	55.13
TraesCS3B01G609900.1	Wheat	nucleus	58.43	54.74
HORVU6Hr1G054640.2	Barley	mitochondrion	67.04	50.28
Zm00001d007811_P001	Maize	cytosol	21.72	39.46
Zm00001d020905_P001	Maize	nucleus	38.58	38.58
GSMUA_Achr9P16220_001	Banana	cytosol	66.29	32.96
HORVU0Hr1G015130.1	Barley	cytosol	33.33	29.37
Zm00001d042413_P001	Maize	cytosol	38.95	19.12

Protein Annotations

EnsemblPlants:CDX99314	EnsemblPlantsGene:GSBRNA2T00107590001	Gene3D:1.10.287.660	GO:GO:0000350	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012	InterPro:Isy1
InterPro:Isy1_sf	ncoils:Coil	PANTHER:PTHR13021	PFAM:PF06246	ProteinID:CDX99314	ProteinID:CDX99314.1
SEG:seg	SUPFAM:SSF140102	UniParc:UPI0004EEF299	MapMan:16.4.5.2.4	:	:

Description

BnaC05g34290D

Coordinates

chrLK031909:-:1052273..1053881

Molecular Weight (calculated)

32208.6 Da

IEP (calculated)

10.316

GRAVY (calculated)

-1.158

Length

267 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRFVTMKE SENKKPKERR PYLASECRDL ADADKWRHQI MREISRKVAE IQNEGLGEHR LRDLNDEINK LLRERWHWER RIVELGGPNY
101: NRHGAKMTDL EGNIIDVPNT SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRRTRYDIYK RIDASYYGYR DEEDGVLEGL ERSAEGEMRR REVEEWRRLD
201: EVRKEARKGA AEVVSVGAAK EVLFEEEEDV RRRRRGSLWC MFPCLMRRRL RRWCCRRRRW TMLNIHR

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.