CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017131_P001	Maize	nucleus	99.03	98.39
Os02t0602500-02	Rice	nucleus	93.85	93.25
TraesCS6D01G197000.1	Wheat	nucleus	90.94	90.35
TraesCS6B01G244300.1	Wheat	nucleus	90.94	90.35
TraesCS6A01G214300.1	Wheat	nucleus	90.29	89.71
HORVU6Hr1G013160.1	Barley	cytosol	82.85	84.77
HORVU6Hr1G009190.1	Barley	cytosol	85.11	84.29
TraesCS3A01G532300.1	Wheat	nucleus	60.19	84.16
HORVU6Hr1G013130.1	Barley	cytosol	81.88	83.77
HORVU6Hr1G054640.2	Barley	mitochondrion	90.61	78.65
TraesCS3B01G609900.1	Wheat	nucleus	70.55	76.49
KRH15273	Soybean	nucleus	71.52	73.91
KRH38151	Soybean	endoplasmic reticulum	71.2	73.58
KRH55159	Soybean	nucleus	70.87	72.76
AT3G18790.1	Thale cress	nucleus	70.23	72.33
VIT_04s0044g00540.t01	Wine grape	nucleus	68.93	71.48
Bra022357.1-P	Field mustard	nucleus	68.28	71.04
PGSC0003DMT400017978	Potato	nucleus	67.64	69.9
CDX92274	Canola	nucleus	57.93	67.04
Solyc05g051070.2.1	Tomato	nucleus	66.99	66.77
CDX99314	Canola	nucleus	57.28	66.29
Bra037559.1-P	Field mustard	cytosol	32.36	65.79
CDY18546	Canola	cytosol	31.07	65.31
CDX95495	Canola	nucleus	14.56	54.88
HORVU0Hr1G015130.1	Barley	cytosol	46.6	47.52
GSMUA_Achr9P16220_001	Banana	cytosol	66.67	38.36

Protein Annotations

Gene3D:1.10.287.660	MapMan:16.4.5.2.4	EntrezGene:8072425	UniProt:C5XX61	ncoils:Coil	EnsemblPlants:EES07109
ProteinID:EES07109	ProteinID:EES07109.1	GO:GO:0000350	GO:GO:0000384	GO:GO:0000389	GO:GO:0000974
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0071012	GO:GO:0071013	GO:GO:0071014
GO:GO:0071020	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012	InterPro:Isy1	InterPro:Isy1_sf	PFAM:PF06246
PANTHER:PTHR13021	EnsemblPlantsGene:SORBI_3004G206300	SUPFAM:SSF140102	unigene:Sbi.15158	UniParc:UPI0001A85E42	RefSeq:XP_002454133.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:55700796..55703612

Molecular Weight (calculated)

36235.9 Da

IEP (calculated)

6.424

GRAVY (calculated)

-1.093

Length

309 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRFITMKQ EEKRKPRERR PYLASECRDL ADAERWRSEI LREIGAKVAE IQNEGLGEHR LRDLNDEINK LLRERGHWER RIVELGGRDY
101: SRSSNAPLMT DLDGNIVAVP NPSGRGPGYR YFGAARKLPG VRELFDKPPE MRKRRTRYEI HKRINAGYYG YYDDEDGVLE RLEAPAEKRM REEIVSEWHR
201: VERVRREAMK GVVSGEVAAA GGRSGEAARE VLFEGVEEEV EEERKREEEK REREKGEEAE FVAHVPLPDE KEIERMVLER KKKELLSKYA SDSLLVEQEE
301: AKEMLNVRR

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.