Factsheet for GSMUA_Achr9P16220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017978	Potato	nucleus	40.22	72.24
VIT_04s0044g00540.t01	Wine grape	nucleus	39.85	71.81
Solyc05g051070.2.1	Tomato	nucleus	40.97	70.97
AT3G18790.1	Thale cress	nucleus	39.48	70.67
TraesCS3A01G532300.1	Wheat	nucleus	28.68	69.68
KRH38151	Soybean	endoplasmic reticulum	38.73	69.57
KRH15273	Soybean	nucleus	38.73	69.57
KRH55159	Soybean	nucleus	38.73	69.1
Bra022357.1-P	Field mustard	nucleus	38.17	69.02
TraesCS6D01G197000.1	Wheat	nucleus	38.73	66.88
TraesCS6B01G244300.1	Wheat	nucleus	38.73	66.88
EES07109	Sorghum	nucleus	38.36	66.67
CDX99314	Canola	nucleus	32.96	66.29
CDX92274	Canola	nucleus	32.96	66.29
Zm00001d017131_P001	Maize	nucleus	38.36	66.24
TraesCS6A01G214300.1	Wheat	nucleus	38.17	65.92
HORVU6Hr1G013160.1	Barley	cytosol	37.06	65.89
Os02t0602500-02	Rice	nucleus	37.99	65.59
HORVU6Hr1G013130.1	Barley	cytosol	36.87	65.56
HORVU6Hr1G009190.1	Barley	cytosol	37.06	63.78
TraesCS3B01G609900.1	Wheat	nucleus	32.03	60.35
HORVU6Hr1G054640.2	Barley	mitochondrion	38.55	58.15
CDY18546	Canola	cytosol	15.27	55.78
Bra037559.1-P	Field mustard	cytosol	15.27	53.95
CDX95495	Canola	nucleus	7.26	47.56
Zm00001d007811_P001	Maize	cytosol	10.99	40.14
Zm00001d020905_P001	Maize	nucleus	18.99	38.2
HORVU0Hr1G015130.1	Barley	cytosol	18.62	33.0
Zm00001d042413_P001	Maize	cytosol	19.55	19.3

Protein Annotations

Gene3D:1.10.287.660	MapMan:16.4.5.2.4	ncoils:Coil	GO:GO:0000350	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSMUA_Achr9G16220_001	EnsemblPlants:GSMUA_Achr9P16220_001	EnsemblPlants:GSMUA_Achr9T16220_001
InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012	InterPro:Isy1	InterPro:Isy1_sf	UniProt:M0U0S9	InterPro:PAP/fibrillin_dom
PFAM:PF04755	PFAM:PF06246	PANTHER:PTHR31906	PANTHER:PTHR31906:SF4	SUPFAM:SSF140102	UniParc:UPI0002950646
SEG:seg	:	:	:	:	:

Description

pre-mRNA-splicing factor ISY1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G16220_001]

Coordinates

chr9:+:10922611..10930669

Molecular Weight (calculated)

61645.6 Da

IEP (calculated)

8.157

GRAVY (calculated)

-0.748

Length

537 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRWVDMKN EEKRKPKERR PYLASECRDL AEAHKWRSEI LREIGVKVTE IQNEGLGEHR LRDLNDEINK LLRERVHWER RIVELGGPNY
101: TKHAAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPEVK KRRTRYEIYK RIDASYYGYR DDEDGILEKL EAPAQDDMRR RAVEELERIK
201: AIRSEAMKMV KSGEEERRLE MEEELERTKV QQEFVAHVPL PDDKEIERMV VEKKKKELLS KYMSEELMEE EQEAKEMLNV NSNFEAFPRN RLAKGTQNRR
301: HSSRKRSASA LVASASTTGA TGMADGTNRN GRDGPSSTAE VGTIDDIKAA LYQALTGIDR GIFGATSSKK SEIAGFVELL ESRNPTPYPT DHLRDKVDGC
401: WKLVYSTISI LGSTRTKLGL RGFISLGDFF QIINVAKEEA TNVIKFNLRG LQLLSGQLTI EASYRIASKT RVDIKLERSN ITPDQLMKIF EKNLDLLLAI
501: FNPQGWLEIT YVDESMRIGR DDKGNIFVLE RNDDIEV

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.