Factsheet for Os02t0602500-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07109	Sorghum	nucleus	93.25	93.85
Zm00001d017131_P001	Maize	nucleus	92.6	92.6
TraesCS6D01G197000.1	Wheat	nucleus	92.6	92.6
TraesCS6B01G244300.1	Wheat	nucleus	92.6	92.6
TraesCS6A01G214300.1	Wheat	nucleus	91.96	91.96
HORVU6Hr1G013160.1	Barley	cytosol	84.57	87.09
HORVU6Hr1G009190.1	Barley	cytosol	86.5	86.22
HORVU6Hr1G013130.1	Barley	cytosol	83.6	86.09
TraesCS3A01G532300.1	Wheat	nucleus	60.45	85.07
HORVU6Hr1G054640.2	Barley	mitochondrion	92.6	80.9
TraesCS3B01G609900.1	Wheat	nucleus	72.35	78.95
KRH15273	Soybean	nucleus	69.13	71.91
AT3G18790.1	Thale cress	nucleus	69.13	71.67
KRH38151	Soybean	endoplasmic reticulum	68.81	71.57
KRH55159	Soybean	nucleus	68.81	71.1
VIT_04s0044g00540.t01	Wine grape	nucleus	67.85	70.81
Bra022357.1-P	Field mustard	nucleus	67.2	70.37
PGSC0003DMT400017978	Potato	nucleus	66.24	68.9
CDX92274	Canola	nucleus	57.56	67.04
CDX99314	Canola	nucleus	57.23	66.67
Solyc05g051070.2.1	Tomato	nucleus	65.59	65.81
Bra037559.1-P	Field mustard	cytosol	31.83	65.13
CDY18546	Canola	cytosol	30.55	64.63
CDX95495	Canola	nucleus	14.15	53.66
HORVU0Hr1G015130.1	Barley	cytosol	47.59	48.84
GSMUA_Achr9P16220_001	Banana	cytosol	65.59	37.99

Protein Annotations

Gene3D:1.10.287.660	MapMan:16.4.5.2.4	EntrezGene:4329902	EMBL:AK064340	ProteinID:BAD19345.1	ProteinID:BAD22171.1
ProteinID:BAS79630.1	ncoils:Coil	ProteinID:EAZ23717.1	GO:GO:0000350	GO:GO:0000384	GO:GO:0000389
GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0071012	GO:GO:0071013	GO:GO:0071014	GO:GO:0071020	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012
InterPro:Isy1	InterPro:Isy1_sf	EnsemblPlantsGene:Os02g0602500	EnsemblPlants:Os02t0602500-02	PFAM:PF06246	PANTHER:PTHR13021
UniProt:Q6K5F4	SUPFAM:SSF140102	UniParc:UPI0000375828	RefSeq:XP_015625937.1	SEG:seg	:

Description

Similar to Pre-mRNA-splicing factor ISY1. (Os02t0602500-01);Isy1-like splicing family protein. (Os02t0602500-02)

Coordinates

chr2:-:23578399..23580823

Molecular Weight (calculated)

36468.3 Da

IEP (calculated)

6.557

GRAVY (calculated)

-1.098

Length

311 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRFITMKQ EEKRKPRERR PYLASECRDL ADAERWRSEI LREIGAKVAE IQNEGLGEHR LRDLNDEINK LLRERGHWER RIVELGGRDH
101: SRSSNAPLMT DLDGNIVAIP NPSGRGPGYR YFGAAKKLPG VRELFDKPPE VRKRRTRYEI HKRINAGYYG YYDDEDGMLE RLEAVAEKRM RNEVITEWHR
201: VERVRREAMK GVVSGEVASA GGRGGEAARE VLFEEVEEEV EEERRLEEEK REREKGEEAG KEFIAHVPLP DEKEIERMVL ERKKKELLSK YTSDALQVEQ
301: EEAKEMLNVR R

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.