Factsheet for Bra022357.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037559.1-P	Field mustard	cytosol	47.14	92.11
CDX92274	Canola	nucleus	80.13	89.14
CDX99314	Canola	nucleus	79.8	88.76
AT3G18790.1	Thale cress	nucleus	87.54	86.67
KRH15273	Soybean	nucleus	78.11	77.59
KRH38151	Soybean	endoplasmic reticulum	77.78	77.26
VIT_04s0044g00540.t01	Wine grape	nucleus	77.44	77.18
PGSC0003DMT400017978	Potato	nucleus	77.44	76.92
KRH55159	Soybean	nucleus	77.78	76.74
Solyc05g051070.2.1	Tomato	nucleus	77.78	74.52
TraesCS6B01G244300.1	Wheat	nucleus	72.39	69.13
TraesCS6D01G197000.1	Wheat	nucleus	72.39	69.13
HORVU6Hr1G013160.1	Barley	cytosol	70.03	68.87
HORVU6Hr1G013130.1	Barley	cytosol	69.7	68.54
TraesCS6A01G214300.1	Wheat	nucleus	71.72	68.49
EES07109	Sorghum	nucleus	71.04	68.28
Zm00001d017131_P001	Maize	nucleus	71.38	68.17
TraesCS3A01G532300.1	Wheat	nucleus	50.51	67.87
Os02t0602500-02	Rice	nucleus	70.37	67.2
HORVU6Hr1G009190.1	Barley	cytosol	70.03	66.67
TraesCS3B01G609900.1	Wheat	nucleus	58.59	61.05
HORVU6Hr1G054640.2	Barley	mitochondrion	72.39	60.39
Zm00001d007811_P001	Maize	cytosol	19.19	38.78
GSMUA_Achr9P16220_001	Banana	cytosol	69.02	38.17
Zm00001d020905_P001	Maize	nucleus	34.01	37.83
HORVU0Hr1G015130.1	Barley	cytosol	37.37	36.63
Zm00001d042413_P001	Maize	cytosol	35.35	19.3

Protein Annotations

EnsemblPlants:Bra022357.1	EnsemblPlants:Bra022357.1-P	EnsemblPlantsGene:Bra022357	Gene3D:1.10.287.660	GO:GO:0000350	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012
InterPro:Isy1	InterPro:Isy1_sf	ncoils:Coil	PANTHER:PTHR13021	PFAM:PF06246	SEG:seg
SUPFAM:SSF140102	UniParc:UPI0002548066	UniProt:M4E0R0	MapMan:16.4.5.2.4	:	:

Description

AT3G18790 (E=4e-121) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1075 Blast hits to 879 proteins in 176 species: Archae - 8; Bacteria - 11; Metazoa - 379; Fungi - 177; Plants - 27; Viruses - 9; Other Eukaryotes - 464 (source: NCBI BLink).

Coordinates

chrA05:-:18195773..18196666

Molecular Weight (calculated)

35355.8 Da

IEP (calculated)

5.654

GRAVY (calculated)

-1.192

Length

297 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRFVTMKE SENKKPKERR PYLASECRDL ADADKWRHQI MREISRKVAE IQNEGLGEHR LRDLNDEINK LLRERWHWER RIVELGGPNY
101: NRHGAKMTDL EGNIIDVPNT SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRRTRYDIYK RIDASYYGYR DEEDGVLEGL ERSAEGEMRR REVEEWRRLD
201: EVGREARKGA AEVVSVGAAK EVLFEEEEDV VEEERREREK EEEEKEREFV VHVPLPDEKE IEKMVLQKKK MELLREYASD DLVEQEKEAK AMLNIHR

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.