Factsheet for TraesCS6A01G214300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G197000.1	Wheat	nucleus	99.04	99.04
TraesCS6B01G244300.1	Wheat	nucleus	99.04	99.04
Os02t0602500-02	Rice	nucleus	91.96	91.96
EES07109	Sorghum	nucleus	89.71	90.29
Zm00001d017131_P001	Maize	nucleus	89.39	89.39
TraesCS3A01G532300.1	Wheat	nucleus	63.02	88.69
HORVU6Hr1G054640.2	Barley	mitochondrion	98.07	85.67
KRH15273	Soybean	nucleus	70.1	72.91
KRH38151	Soybean	endoplasmic reticulum	70.1	72.91
VIT_04s0044g00540.t01	Wine grape	nucleus	69.45	72.48
AT3G18790.1	Thale cress	nucleus	69.45	72.0
KRH55159	Soybean	nucleus	69.45	71.76
Bra022357.1-P	Field mustard	nucleus	68.49	71.72
PGSC0003DMT400017978	Potato	nucleus	67.52	70.23
Solyc05g051070.2.1	Tomato	nucleus	66.88	67.1
CDX92274	Canola	nucleus	57.56	67.04
CDX99314	Canola	nucleus	57.23	66.67
CDY18546	Canola	cytosol	31.19	65.99
Bra037559.1-P	Field mustard	cytosol	32.15	65.79
CDX95495	Canola	nucleus	14.47	54.88
GSMUA_Achr9P16220_001	Banana	cytosol	65.92	38.17

Protein Annotations

EnsemblPlants:TraesCS6A01G214300.1	EnsemblPlantsGene:TraesCS6A01G214300	Gene3D:1.10.287.660	GO:GO:0000350	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012	InterPro:Isy1
InterPro:Isy1_sf	ncoils:Coil	PANTHER:PTHR13021	PFAM:PF06246	SEG:seg	SUPFAM:SSF140102
MapMan:16.4.5.2.4	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:391257827..391258762

Molecular Weight (calculated)

36297.0 Da

IEP (calculated)

5.889

GRAVY (calculated)

-1.059

Length

311 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRFITMKQ EEKRKPRERR PYLASECRDL ADADRWRGEI LREIGVKVAE IQNEGLGEHR LRDLNDEINK LLRERSHWER RILELGGRDY
101: SRSSNAALMT DLDGNIVAIP NPSGRGPGYR YFGAAKKLPG VRELFDKPPE VRKRRTRYEI HKRINAGYYG YYDDEDGVLE PLKAAAEKRM RDEVVTEWHR
201: VERVRREAMK NVVSGEVAAA GGRGGEAATE VLFEEVEEEV EEERRLEEER MEREKGEEAG REFVAHVPLP DEKEIERMVL EQKKKELLSK YTSDTLQGEQ
301: KEAKEMLNVQ R

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.