Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18546 | Canola | cytosol | 41.46 | 23.13 |
| Bra037559.1-P | Field mustard | cytosol | 41.46 | 22.37 |
| TraesCS3A01G532300.1 | Wheat | nucleus | 51.22 | 19.0 |
| CDX92274 | Canola | nucleus | 58.54 | 17.98 |
| CDX99314 | Canola | nucleus | 58.54 | 17.98 |
| TraesCS3B01G609900.1 | Wheat | nucleus | 51.22 | 14.74 |
| PGSC0003DMT400017978 | Potato | nucleus | 53.66 | 14.72 |
| AT3G18790.1 | Thale cress | nucleus | 53.66 | 14.67 |
| EES07109 | Sorghum | nucleus | 54.88 | 14.56 |
| TraesCS6D01G197000.1 | Wheat | nucleus | 54.88 | 14.47 |
| TraesCS6B01G244300.1 | Wheat | nucleus | 54.88 | 14.47 |
| TraesCS6A01G214300.1 | Wheat | nucleus | 54.88 | 14.47 |
| Zm00001d017131_P001 | Maize | nucleus | 54.88 | 14.47 |
| VIT_04s0044g00540.t01 | Wine grape | nucleus | 52.44 | 14.43 |
| KRH15273 | Soybean | nucleus | 52.44 | 14.38 |
| KRH38151 | Soybean | endoplasmic reticulum | 52.44 | 14.38 |
| KRH55159 | Soybean | nucleus | 52.44 | 14.29 |
| Solyc05g051070.2.1 | Tomato | nucleus | 53.66 | 14.19 |
| Os02t0602500-02 | Rice | nucleus | 53.66 | 14.15 |
| HORVU6Hr1G013160.1 | Barley | cytosol | 50.0 | 13.58 |
| HORVU6Hr1G013130.1 | Barley | cytosol | 50.0 | 13.58 |
| HORVU6Hr1G009190.1 | Barley | cytosol | 50.0 | 13.14 |
| HORVU6Hr1G054640.2 | Barley | mitochondrion | 54.88 | 12.64 |
| HORVU0Hr1G015130.1 | Barley | cytosol | 32.93 | 8.91 |
| GSMUA_Achr9P16220_001 | Banana | cytosol | 47.56 | 7.26 |
| Zm00001d020905_P001 | Maize | nucleus | 20.73 | 6.37 |
| Zm00001d007811_P001 | Maize | cytosol | 8.54 | 4.76 |
| Zm00001d042413_P001 | Maize | cytosol | 25.61 | 3.86 |
Protein Annotations
| EnsemblPlants:CDX95495 | EnsemblPlantsGene:GSBRNA2T00101297001 | GO:GO:0000350 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:Isy1 | PFAM:PF06246 | ProteinID:CDX95495 | ProteinID:CDX95495.1 |
| SEG:seg | UniParc:UPI0004EDE503 | MapMan:35.2 | : | : | : |
Description
BnaC01g33870D
Coordinates
chrLK031889:-:690636..691536
Molecular Weight (calculated)
9047.7 Da
IEP (calculated)
10.913
GRAVY (calculated)
-1.168
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MARNEEKAQS MLNRFVTMKE SENKKPVQRR PYLASPTQTN GDSRSCERSA AKLGGRRGRG RRRRIGEGEG EGEGVCGACS FA
001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
Arabidopsis Description
AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.