Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007811_P001 | Maize | cytosol | 50.19 | 91.16 |
| CDX92274 | Canola | nucleus | 39.7 | 39.7 |
| Zm00001d017131_P001 | Maize | nucleus | 46.07 | 39.55 |
| CDX99314 | Canola | nucleus | 38.58 | 38.58 |
| KRH15273 | Soybean | nucleus | 39.33 | 35.12 |
| KRH38151 | Soybean | endoplasmic reticulum | 38.95 | 34.78 |
| KRH55159 | Soybean | nucleus | 38.58 | 34.22 |
| Bra022357.1-P | Field mustard | nucleus | 37.83 | 34.01 |
| PGSC0003DMT400017978 | Potato | nucleus | 37.83 | 33.78 |
| AT3G18790.1 | Thale cress | nucleus | 37.45 | 33.33 |
| VIT_04s0044g00540.t01 | Wine grape | nucleus | 37.08 | 33.22 |
| Solyc05g051070.2.1 | Tomato | nucleus | 37.45 | 32.26 |
| Zm00001d042413_P001 | Maize | cytosol | 54.31 | 26.65 |
| CDX95495 | Canola | nucleus | 6.37 | 20.73 |
| GSMUA_Achr9P16220_001 | Banana | cytosol | 38.2 | 18.99 |
| CDY18546 | Canola | cytosol | 5.62 | 10.2 |
| Bra037559.1-P | Field mustard | cytosol | 5.62 | 9.87 |
Protein Annotations
| EnsemblPlants:Zm00001d020905_P001 | EnsemblPlants:Zm00001d020905_T001 | EnsemblPlantsGene:Zm00001d020905 | Gene3D:1.10.287.660 | GO:GO:0000350 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR029012 |
| InterPro:Isy1 | InterPro:Isy1_sf | ncoils:Coil | PANTHER:PTHR13021 | PFAM:PF06246 | ProteinID:ONM55794.1 |
| SEG:seg | SUPFAM:SSF140102 | UniParc:UPI0008442B9D | UniProt:A0A1D6I6U8 | MapMan:16.4.5.2.4 | : |
Description
Pre-mRNA-splicing factor isy-1
Coordinates
chr7:+:136147501..136149899
Molecular Weight (calculated)
29924.7 Da
IEP (calculated)
11.377
GRAVY (calculated)
-0.721
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSHCPAHR ASEAQPTMFD DYYIMDCDVI SAPEVMQRRT DNNDQFVILA TVTVAFVLNK GLGEHRLRDL NDEINKLLRE RGHWERRIVE LGSRDYSRSS
101: NAPLMTDLNG NIVVVPNPSG RGPGYRYFGA ARKLPGVREL FDKPPEMRKR RTRYEIHKRI NARGRQAPDV ALLQLQGPGR AAGGGVAGGP RGPPRRRWYF
201: FNRSASRPTL LHASAQATLA HRRRRPQTCT HRLADPDASV ASLLYPPAAR PHTSADRRPP SGRPLNA
101: NAPLMTDLNG NIVVVPNPSG RGPGYRYFGA ARKLPGVREL FDKPPEMRKR RTRYEIHKRI NARGRQAPDV ALLQLQGPGR AAGGGVAGGP RGPPRRRWYF
201: FNRSASRPTL LHASAQATLA HRRRRPQTCT HRLADPDASV ASLLYPPAAR PHTSADRRPP SGRPLNA
001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
Arabidopsis Description
AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.