Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH38151 | Soybean | endoplasmic reticulum | 99.67 | 99.67 |
| KRH55159 | Soybean | nucleus | 96.32 | 95.68 |
| VIT_04s0044g00540.t01 | Wine grape | nucleus | 80.94 | 81.21 |
| AT3G18790.1 | Thale cress | nucleus | 80.27 | 80.0 |
| PGSC0003DMT400017978 | Potato | nucleus | 79.6 | 79.6 |
| Bra022357.1-P | Field mustard | nucleus | 77.59 | 78.11 |
| Solyc05g051070.2.1 | Tomato | nucleus | 79.26 | 76.45 |
| CDX92274 | Canola | nucleus | 66.56 | 74.53 |
| CDX99314 | Canola | nucleus | 65.89 | 73.78 |
| EES07109 | Sorghum | nucleus | 73.91 | 71.52 |
| Zm00001d017131_P001 | Maize | nucleus | 74.25 | 71.38 |
| TraesCS6D01G197000.1 | Wheat | nucleus | 73.91 | 71.06 |
| TraesCS6B01G244300.1 | Wheat | nucleus | 73.91 | 71.06 |
| Bra037559.1-P | Field mustard | cytosol | 35.79 | 70.39 |
| HORVU6Hr1G013160.1 | Barley | cytosol | 70.9 | 70.2 |
| TraesCS6A01G214300.1 | Wheat | nucleus | 72.91 | 70.1 |
| HORVU6Hr1G013130.1 | Barley | cytosol | 70.57 | 69.87 |
| CDY18546 | Canola | cytosol | 34.11 | 69.39 |
| Os02t0602500-02 | Rice | nucleus | 71.91 | 69.13 |
| TraesCS3A01G532300.1 | Wheat | nucleus | 50.5 | 68.33 |
| HORVU6Hr1G009190.1 | Barley | cytosol | 70.57 | 67.63 |
| TraesCS3B01G609900.1 | Wheat | nucleus | 59.87 | 62.81 |
| HORVU6Hr1G054640.2 | Barley | mitochondrion | 74.25 | 62.36 |
| CDX95495 | Canola | nucleus | 14.38 | 52.44 |
| Zm00001d007811_P001 | Maize | cytosol | 20.74 | 42.18 |
| Zm00001d020905_P001 | Maize | nucleus | 35.12 | 39.33 |
| GSMUA_Achr9P16220_001 | Banana | cytosol | 69.57 | 38.73 |
| HORVU0Hr1G015130.1 | Barley | cytosol | 38.13 | 37.62 |
| Zm00001d042413_P001 | Maize | cytosol | 35.79 | 19.67 |
Protein Annotations
| Gene3D:1.10.287.660 | EntrezGene:100813312 | MapMan:16.4.5.2.4 | EMBL:ACUP02008570 | ncoils:Coil | EnsemblPlantsGene:GLYMA_14G078500 |
| GO:GO:0000350 | GO:GO:0000384 | GO:GO:0000389 | GO:GO:0000974 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0071012 | GO:GO:0071013 | GO:GO:0071014 |
| GO:GO:0071020 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR029012 | InterPro:Isy1 | InterPro:Isy1_sf | UniProt:K7M5I4 |
| EnsemblPlants:KRH15273 | ProteinID:KRH15273 | ProteinID:KRH15273.1 | PFAM:PF06246 | PANTHER:PTHR13021 | SUPFAM:SSF140102 |
| UniParc:UPI000233B562 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr14:+:6641416..6642825
Molecular Weight (calculated)
35274.8 Da
IEP (calculated)
6.579
GRAVY (calculated)
-1.159
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNEEKAQS MLNRFITMKA EEKKKPKERR PFLASECRDL SEADKWRQQI MREIGRKVAE IQNEGLGEHR LRDLNDEINK LIREKSHWER RIVELGGPNY
101: SKHSAKMTDL DGNIVDVPNP GGRGPGYRYF GAAKKLPGVK ELFEKPPELR RRRTRYDIYK RIDASYYGYR DEEDGVLARL EGPAEEAMRR EAAEEWRRLD
201: EVRREARKGV VSGEVAEVTA VAREVLKEDE EEVVEEERAR EREEERERRE FVVHVPLPDE KEIERRVLEK KKKDLLSRYA SEGLVEEQTE AKDMLNIQR
101: SKHSAKMTDL DGNIVDVPNP GGRGPGYRYF GAAKKLPGVK ELFEKPPELR RRRTRYDIYK RIDASYYGYR DEEDGVLARL EGPAEEAMRR EAAEEWRRLD
201: EVRREARKGV VSGEVAEVTA VAREVLKEDE EEVVEEERAR EREEERERRE FVVHVPLPDE KEIERRVLEK KKKDLLSRYA SEGLVEEQTE AKDMLNIQR
001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
Arabidopsis Description
AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.