Factsheet for HORVU6Hr1G009190.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G013160.1	Barley	cytosol	94.55	97.68
HORVU6Hr1G013130.1	Barley	cytosol	93.59	96.69
Os02t0602500-02	Rice	nucleus	86.22	86.5
EES07109	Sorghum	nucleus	84.29	85.11
Zm00001d017131_P001	Maize	nucleus	83.97	84.24
TraesCS3A01G532300.1	Wheat	nucleus	58.65	82.81
HORVU6Hr1G054640.2	Barley	mitochondrion	91.99	80.62
TraesCS3B01G609900.1	Wheat	nucleus	71.79	78.6
AT3G18790.1	Thale cress	nucleus	67.95	70.67
KRH38151	Soybean	endoplasmic reticulum	67.63	70.57
KRH15273	Soybean	nucleus	67.63	70.57
VIT_04s0044g00540.t01	Wine grape	nucleus	66.99	70.13
Bra022357.1-P	Field mustard	nucleus	66.67	70.03
KRH55159	Soybean	nucleus	66.99	69.44
PGSC0003DMT400017978	Potato	nucleus	64.74	67.56
CDX92274	Canola	nucleus	55.45	64.79
Solyc05g051070.2.1	Tomato	nucleus	64.1	64.52
CDX99314	Canola	nucleus	55.13	64.42
CDY18546	Canola	cytosol	30.13	63.95
Bra037559.1-P	Field mustard	cytosol	31.09	63.82
HORVU0Hr1G015130.1	Barley	cytosol	53.21	54.79
CDX95495	Canola	nucleus	13.14	50.0
GSMUA_Achr9P16220_001	Banana	cytosol	63.78	37.06

Protein Annotations

EnsemblPlants:HORVU6Hr1G009190.1	EnsemblPlantsGene:HORVU6Hr1G009190	Gene3D:1.10.287.660	GO:GO:0000350	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012	InterPro:Isy1
InterPro:Isy1_sf	ncoils:Coil	PANTHER:PTHR13021	PFAM:PF06246	SEG:seg	SUPFAM:SSF140102
UniParc:UPI000B464E48	UniProt:A0A287T8X8	MapMan:16.4.5.2.4	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:16434446..16435384

Molecular Weight (calculated)

36307.0 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.980

Length

312 amino acids

Sequence
(BLAST)

001: MARNEEKAQA LLNRFITIKQ EEKRKPRERR PYLASQCRDL AHADRWRVDI LREIGVKVAE IQNEGLAEHR LRDLNDAINK LLRERSHWER RILELGGRDY
101: SRSSNAALMT DLDGNIVAVP NPSGRGPGYR YFGHAKNLPG VRELFDKPPE VRKRRTRYEI CKRIDAGYYG YHDDEDGVLE PLEAAAEKRK RDEVVTEWHR
201: VERVRREAMK NVVSGEVAGA GGRVGEVAAR EVLFEEVEEE VEEERRLEEE RMEREKGEEA GREFVAHVPL PDDKEIERMV LAKKKEELLS KYTSDALQGQ
301: QKEAKEMLNV QR

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.