Factsheet for Solyc05g051070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017978	Potato	nucleus	95.48	99.0
VIT_04s0044g00540.t01	Wine grape	nucleus	80.97	84.23
KRH38151	Soybean	endoplasmic reticulum	76.45	79.26
KRH15273	Soybean	nucleus	76.45	79.26
AT3G18790.1	Thale cress	nucleus	76.13	78.67
KRH55159	Soybean	nucleus	76.13	78.41
Bra022357.1-P	Field mustard	nucleus	74.52	77.78
CDY18546	Canola	cytosol	34.52	72.79
Bra037559.1-P	Field mustard	cytosol	35.16	71.71
CDX92274	Canola	nucleus	61.29	71.16
CDX99314	Canola	nucleus	60.97	70.79
TraesCS3A01G532300.1	Wheat	nucleus	49.03	68.78
TraesCS6D01G197000.1	Wheat	nucleus	67.42	67.2
TraesCS6B01G244300.1	Wheat	nucleus	67.42	67.2
EES07109	Sorghum	nucleus	66.77	66.99
Zm00001d017131_P001	Maize	nucleus	67.1	66.88
TraesCS6A01G214300.1	Wheat	nucleus	67.1	66.88
HORVU6Hr1G013160.1	Barley	cytosol	64.84	66.56
HORVU6Hr1G013130.1	Barley	cytosol	64.52	66.23
Os02t0602500-02	Rice	nucleus	65.81	65.59
HORVU6Hr1G009190.1	Barley	cytosol	64.52	64.1
TraesCS3B01G609900.1	Wheat	nucleus	56.13	61.05
HORVU6Hr1G054640.2	Barley	mitochondrion	67.74	58.99
CDX95495	Canola	nucleus	14.19	53.66
Zm00001d007811_P001	Maize	cytosol	19.68	41.5
GSMUA_Achr9P16220_001	Banana	cytosol	70.97	40.97
Zm00001d020905_P001	Maize	nucleus	32.26	37.45
HORVU0Hr1G015130.1	Barley	cytosol	33.87	34.65
Zm00001d042413_P001	Maize	cytosol	32.58	18.57

Protein Annotations

Gene3D:1.10.287.660	MapMan:16.4.5.2.4	ncoils:Coil	GO:GO:0000350	GO:GO:0000384	GO:GO:0000389
GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0071012	GO:GO:0071013	GO:GO:0071014	GO:GO:0071020	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012
InterPro:Isy1	InterPro:Isy1_sf	UniProt:K4C1D9	PFAM:PF06246	PANTHER:PTHR13021	SUPFAM:SSF140102
EnsemblPlantsGene:Solyc05g051070.2	EnsemblPlants:Solyc05g051070.2.1	UniParc:UPI000276742A	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:61275757..61283276

Molecular Weight (calculated)

36447.6 Da

IEP (calculated)

5.361

GRAVY (calculated)

-1.045

Length

310 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRFITMKE EEKKKPKERR PYLASECRDL AEADKWRQQI MREIGRKVTE IQNEGLGEHR LRDLNDEINK LIREKVHWER RIIELGGPNY
101: TKHSAKMTDL DGNIIDVPNP GGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRRTRYDIYK RIDASYYGYR DEEDGILVKL EGPAEKKMRA AAVKEWMEME
201: EIKREAKKAV KSGEVVEVGL GSKILFEEEE DVIEEERMER EREEKDREKE YVVHVPLPDE KEIERMVVEH KKMELLSKYA SEDLMEEQME AKAMLNIQSD
301: VAQQCDEGSA

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.