Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G609900.1 | Wheat | nucleus | 89.59 | 69.47 |
| TraesCS6A01G214300.1 | Wheat | nucleus | 88.69 | 63.02 |
| HORVU6Hr1G013160.1 | Barley | cytosol | 82.81 | 60.6 |
| Os02t0602500-02 | Rice | nucleus | 85.07 | 60.45 |
| HORVU6Hr1G013130.1 | Barley | cytosol | 82.35 | 60.26 |
| EES07109 | Sorghum | nucleus | 84.16 | 60.19 |
| Zm00001d017131_P001 | Maize | nucleus | 83.71 | 59.49 |
| HORVU6Hr1G009190.1 | Barley | cytosol | 82.81 | 58.65 |
| CDX99314 | Canola | nucleus | 67.87 | 56.18 |
| CDX92274 | Canola | nucleus | 67.87 | 56.18 |
| VIT_04s0044g00540.t01 | Wine grape | nucleus | 69.68 | 51.68 |
| CDX95495 | Canola | nucleus | 19.0 | 51.22 |
| PGSC0003DMT400017978 | Potato | nucleus | 69.23 | 51.17 |
| AT3G18790.1 | Thale cress | nucleus | 69.23 | 51.0 |
| Bra022357.1-P | Field mustard | nucleus | 67.87 | 50.51 |
| KRH15273 | Soybean | nucleus | 68.33 | 50.5 |
| KRH38151 | Soybean | endoplasmic reticulum | 68.33 | 50.5 |
| KRH55159 | Soybean | nucleus | 67.87 | 49.83 |
| Solyc05g051070.2.1 | Tomato | nucleus | 68.78 | 49.03 |
| HORVU0Hr1G015130.1 | Barley | cytosol | 41.63 | 30.36 |
| Bra037559.1-P | Field mustard | cytosol | 20.81 | 30.26 |
| CDY18546 | Canola | cytosol | 19.91 | 29.93 |
| GSMUA_Achr9P16220_001 | Banana | cytosol | 69.68 | 28.68 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G532300.1 | EnsemblPlantsGene:TraesCS3A01G532300 | Gene3D:1.10.287.660 | GO:GO:0000350 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR029012 | InterPro:Isy1 |
| InterPro:Isy1_sf | ncoils:Coil | PANTHER:PTHR13021 | PFAM:PF06246 | SEG:seg | SUPFAM:SSF140102 |
| MapMan:16.4.5.2.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:745472570..745473481
Molecular Weight (calculated)
25636.4 Da
IEP (calculated)
9.252
GRAVY (calculated)
-1.057
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPPTMARNE EKAQSLLNRF TTMKQEEKRK PRERRPYLAS ECRDLADADR WHGEILREIG AKLAEIQNEG LGEHRLRDLN DEINKLLRER SHWERRILEL
101: GGRDYSRSSN AALMTDLDGN IVAIPNPSGR GPGYRYFGAA KKLPGVRELF DKPPEVRKRG TRYGVHKRIN AGYCGYYYYD DEDGALEPHE AAAEKRMRHE
201: LVTEWHRVEQ EAMKNVASGC K
101: GGRDYSRSSN AALMTDLDGN IVAIPNPSGR GPGYRYFGAA KKLPGVRELF DKPPEVRKRG TRYGVHKRIN AGYCGYYYYD DEDGALEPHE AAAEKRMRHE
201: LVTEWHRVEQ EAMKNVASGC K
001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
Arabidopsis Description
AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.