Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017978 | Potato | nucleus | 84.56 | 84.28 |
| Solyc05g051070.2.1 | Tomato | nucleus | 84.23 | 80.97 |
| KRH38151 | Soybean | endoplasmic reticulum | 81.21 | 80.94 |
| KRH15273 | Soybean | nucleus | 81.21 | 80.94 |
| KRH55159 | Soybean | nucleus | 81.54 | 80.73 |
| AT3G18790.1 | Thale cress | nucleus | 79.87 | 79.33 |
| Bra022357.1-P | Field mustard | nucleus | 77.18 | 77.44 |
| Bra037559.1-P | Field mustard | cytosol | 36.91 | 72.37 |
| CDY18546 | Canola | cytosol | 35.57 | 72.11 |
| CDX92274 | Canola | nucleus | 63.09 | 70.41 |
| TraesCS6B01G244300.1 | Wheat | nucleus | 73.15 | 70.1 |
| TraesCS6D01G197000.1 | Wheat | nucleus | 73.15 | 70.1 |
| CDX99314 | Canola | nucleus | 62.75 | 70.04 |
| TraesCS3A01G532300.1 | Wheat | nucleus | 51.68 | 69.68 |
| HORVU6Hr1G013160.1 | Barley | cytosol | 70.47 | 69.54 |
| TraesCS6A01G214300.1 | Wheat | nucleus | 72.48 | 69.45 |
| HORVU6Hr1G013130.1 | Barley | cytosol | 70.13 | 69.21 |
| Zm00001d017131_P001 | Maize | nucleus | 72.15 | 69.13 |
| EES07109 | Sorghum | nucleus | 71.48 | 68.93 |
| Os02t0602500-02 | Rice | nucleus | 70.81 | 67.85 |
| HORVU6Hr1G009190.1 | Barley | cytosol | 70.13 | 66.99 |
| TraesCS3B01G609900.1 | Wheat | nucleus | 60.07 | 62.81 |
| HORVU6Hr1G054640.2 | Barley | mitochondrion | 73.49 | 61.52 |
| CDX95495 | Canola | nucleus | 14.43 | 52.44 |
| Zm00001d007811_P001 | Maize | cytosol | 19.8 | 40.14 |
| GSMUA_Achr9P16220_001 | Banana | cytosol | 71.81 | 39.85 |
| Zm00001d020905_P001 | Maize | nucleus | 33.22 | 37.08 |
| HORVU0Hr1G015130.1 | Barley | cytosol | 37.25 | 36.63 |
| Zm00001d042413_P001 | Maize | cytosol | 34.56 | 18.93 |
Protein Annotations
| Gene3D:1.10.287.660 | EntrezGene:100250525 | wikigene:100250525 | MapMan:16.4.5.2.4 | UniProt:A5AII6 | EMBL:AM427554 |
| ProteinID:CAN60270 | ProteinID:CAN60270.1 | ProteinID:CCB60453 | ProteinID:CCB60453.1 | ncoils:Coil | EMBL:FN596506 |
| GO:GO:0000350 | GO:GO:0000384 | GO:GO:0000389 | GO:GO:0000974 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0071012 | GO:GO:0071013 | GO:GO:0071014 |
| GO:GO:0071020 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR029012 | InterPro:Isy1 | InterPro:Isy1_sf | EntrezGene:LOC100250525 |
| wikigene:LOC100250525 | PFAM:PF06246 | PANTHER:PTHR13021 | SUPFAM:SSF140102 | UniParc:UPI000151E9EA | ArrayExpress:VIT_04s0044g00540 |
| EnsemblPlantsGene:VIT_04s0044g00540 | EnsemblPlants:VIT_04s0044g00540.t01 | RefSeq:XP_002282621 | RefSeq:XP_002282621.1 | RefSeq:XP_003631919 | RefSeq:XP_003631919.1 |
| RefSeq:XP_003631920 | RefSeq:XP_003631920.1 | RefSeq:XP_019075124.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4:-:21374665..21378232
Molecular Weight (calculated)
34855.5 Da
IEP (calculated)
6.239
GRAVY (calculated)
-1.057
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNEEKAQS MLNRFITLKN EEKKKPKERR PYLASECRDL AEADKWRQQI MREIGRKVAE IQNEGLGEHR LRDLNDEINK LIREKSHWER RIIELGGPNY
101: TKHSAKMTDL EGNIVDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKSRYDIYK RIDASYYGYR DDEDGVLEKV EGPAEERMRA AKLAEWEALE
201: EIKREARRAV KSGEVASVAP AGILFEEEED VVEEERQAAR EKENEKEREF VVHVPLPDEK EIERMVVEKK KMELLSKYTS EGLLEEQTEA KAMLNIQR
101: TKHSAKMTDL EGNIVDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKSRYDIYK RIDASYYGYR DDEDGVLEKV EGPAEERMRA AKLAEWEALE
201: EIKREARRAV KSGEVASVAP AGILFEEEED VVEEERQAAR EKENEKEREF VVHVPLPDEK EIERMVVEKK KMELLSKYTS EGLLEEQTEA KAMLNIQR
001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
Arabidopsis Description
AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.