Factsheet for Bra037559.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18546	Canola	cytosol	89.47	92.52
Bra022357.1-P	Field mustard	nucleus	92.11	47.14
AT3G18790.1	Thale cress	nucleus	82.24	41.67
CDX95495	Canola	nucleus	22.37	41.46
VIT_04s0044g00540.t01	Wine grape	nucleus	72.37	36.91
PGSC0003DMT400017978	Potato	nucleus	72.37	36.79
KRH15273	Soybean	nucleus	70.39	35.79
KRH55159	Soybean	nucleus	70.39	35.55
KRH38151	Soybean	endoplasmic reticulum	69.74	35.45
Solyc05g051070.2.1	Tomato	nucleus	71.71	35.16
Zm00001d017131_P001	Maize	nucleus	66.45	32.48
TraesCS6B01G244300.1	Wheat	nucleus	66.45	32.48
TraesCS6D01G197000.1	Wheat	nucleus	66.45	32.48
EES07109	Sorghum	nucleus	65.79	32.36
TraesCS6A01G214300.1	Wheat	nucleus	65.79	32.15
Os02t0602500-02	Rice	nucleus	65.13	31.83
HORVU6Hr1G013160.1	Barley	cytosol	63.16	31.79
HORVU6Hr1G013130.1	Barley	cytosol	63.16	31.79
HORVU6Hr1G009190.1	Barley	cytosol	63.82	31.09
HORVU6Hr1G054640.2	Barley	mitochondrion	66.45	28.37
HORVU0Hr1G015130.1	Barley	cytosol	51.32	25.74
TraesCS3B01G609900.1	Wheat	nucleus	46.05	24.56
TraesCS3A01G532300.1	Wheat	nucleus	30.26	20.81
GSMUA_Achr9P16220_001	Banana	cytosol	53.95	15.27
Zm00001d020905_P001	Maize	nucleus	9.87	5.62
Zm00001d007811_P001	Maize	cytosol	4.61	4.76
Zm00001d042413_P001	Maize	cytosol	13.16	3.68

Protein Annotations

EnsemblPlants:Bra037559.1	EnsemblPlants:Bra037559.1-P	EnsemblPlantsGene:Bra037559	Gene3D:1.10.287.660	GO:GO:0000350	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012
InterPro:Isy1	InterPro:Isy1_sf	ncoils:Coil	PANTHER:PTHR13021	PFAM:PF06246	SEG:seg
SUPFAM:SSF140102	UniParc:UPI0002544E72	UniProt:M4F8Z6	MapMan:35.2	:	:

Description

AT3G18790 (E=1e-024) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1075 Blast hits to 879 proteins in 176 species: Archae - 8; Bacteria - 11; Metazoa - 379; Fungi - 177; Plants - 27; Viruses - 9; Other Eukaryotes - 464 (source: NCBI BLink).

Coordinates

chrA01:-:21942879..21943573

Molecular Weight (calculated)

18022.6 Da

IEP (calculated)

5.871

GRAVY (calculated)

-1.013

Length

152 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRFVTMKE SENKKPVQRR PYLASECRDL ADADKWRHQI MREISRKVAE IQARKGAAEV VSVGAAKEVL FEEEEDVVEE ERKERERERE
101: KEEKEREFVV HVPLPDEKMV LLKKKMELLR EYASEGLVEQ EKEAKAMLNI HR

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.