Factsheet for HORVU6Hr1G054640.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G197000.1	Wheat	nucleus	86.52	99.04
TraesCS6B01G244300.1	Wheat	nucleus	86.52	99.04
TraesCS6A01G214300.1	Wheat	nucleus	85.67	98.07
Os02t0602500-02	Rice	nucleus	80.9	92.6
HORVU6Hr1G013160.1	Barley	cytosol	78.37	92.38
HORVU6Hr1G009190.1	Barley	cytosol	80.62	91.99
HORVU6Hr1G013130.1	Barley	cytosol	77.53	91.39
EES07109	Sorghum	nucleus	78.65	90.61
Zm00001d017131_P001	Maize	nucleus	78.93	90.35
KRH15273	Soybean	nucleus	62.36	74.25
KRH38151	Soybean	endoplasmic reticulum	62.36	74.25
VIT_04s0044g00540.t01	Wine grape	nucleus	61.52	73.49
KRH55159	Soybean	nucleus	61.8	73.09
AT3G18790.1	Thale cress	nucleus	61.52	73.0
Bra022357.1-P	Field mustard	nucleus	60.39	72.39
PGSC0003DMT400017978	Potato	nucleus	59.55	70.9
Solyc05g051070.2.1	Tomato	nucleus	58.99	67.74
CDX92274	Canola	nucleus	50.56	67.42
CDX99314	Canola	nucleus	50.28	67.04
CDY18546	Canola	cytosol	27.53	66.67
Bra037559.1-P	Field mustard	cytosol	28.37	66.45
CDX95495	Canola	nucleus	12.64	54.88
HORVU0Hr1G015130.1	Barley	cytosol	44.1	51.82
GSMUA_Achr9P16220_001	Banana	cytosol	58.15	38.55

Protein Annotations

Gene3D:1.10.287.660	MapMan:16.4.5.2.4	UniProt:A0A287U813	ncoils:Coil	GO:GO:0000350	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:HORVU6Hr1G054640	EnsemblPlants:HORVU6Hr1G054640.2
InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012	InterPro:Isy1	InterPro:Isy1_sf	PFAM:PF06246	PANTHER:PTHR13021
SUPFAM:SSF140102	UniParc:UPI000B4662F9	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:346241856..346244773

Molecular Weight (calculated)

41101.8 Da

IEP (calculated)

8.362

GRAVY (calculated)

-0.998

Length

356 amino acids

Sequence
(BLAST)

001: SRQNTYPQIP IQPARLPPQT LAPKLANLAA AATRTATGRS ARPLTMARNE EKAQSMLNRF ITMKQEEKRK PRERRPYLAS ECRDLADADR WRGEILREIG
101: VKVAEIQNEG LGEHRLRDLN DEINKLLRER SHWERRILEL GGRDYSRSSN AALMTDLDGN IVAIPNPSGR GPGYRYFGAA KKLPGVRELF DKPPEVRKRR
201: TRYEIHKRIN AGYYGYYDDE DGVLEPLEGA AEKRMRDEVV TEWHRVERVR REAMKNVVSG EVAAAGGRGG EAAREVLFEE VEEEVEEERR LEEERMEREK
301: GEEAGREFVA HVPLPDEKEI ERMVLEKKKK ELLSKYTSDA LQSEQKEAKE MLNVQR

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.