Factsheet for PGSC0003DMT400017978

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g051070.2.1	Tomato	nucleus	99.0	95.48
VIT_04s0044g00540.t01	Wine grape	nucleus	84.28	84.56
KRH38151	Soybean	endoplasmic reticulum	79.6	79.6
KRH15273	Soybean	nucleus	79.6	79.6
KRH55159	Soybean	nucleus	79.26	78.74
AT3G18790.1	Thale cress	nucleus	78.6	78.33
Bra022357.1-P	Field mustard	nucleus	76.92	77.44
CDY18546	Canola	cytosol	36.12	73.47
Bra037559.1-P	Field mustard	cytosol	36.79	72.37
CDX92274	Canola	nucleus	63.21	70.79
CDX99314	Canola	nucleus	62.88	70.41
TraesCS3A01G532300.1	Wheat	nucleus	51.17	69.23
TraesCS6D01G197000.1	Wheat	nucleus	70.57	67.85
TraesCS6B01G244300.1	Wheat	nucleus	70.57	67.85
EES07109	Sorghum	nucleus	69.9	67.64
Zm00001d017131_P001	Maize	nucleus	70.23	67.52
TraesCS6A01G214300.1	Wheat	nucleus	70.23	67.52
HORVU6Hr1G013160.1	Barley	cytosol	67.89	67.22
HORVU6Hr1G013130.1	Barley	cytosol	67.56	66.89
Os02t0602500-02	Rice	nucleus	68.9	66.24
HORVU6Hr1G009190.1	Barley	cytosol	67.56	64.74
TraesCS3B01G609900.1	Wheat	nucleus	58.53	61.4
HORVU6Hr1G054640.2	Barley	mitochondrion	70.9	59.55
CDX95495	Canola	nucleus	14.72	53.66
Zm00001d007811_P001	Maize	cytosol	20.74	42.18
GSMUA_Achr9P16220_001	Banana	cytosol	72.24	40.22
Zm00001d020905_P001	Maize	nucleus	33.78	37.83
HORVU0Hr1G015130.1	Barley	cytosol	35.12	34.65
Zm00001d042413_P001	Maize	cytosol	34.11	18.75

Protein Annotations

Gene3D:1.10.287.660	EntrezGene:102585139	MapMan:16.4.5.2.4	ncoils:Coil	GO:GO:0000350	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012
InterPro:Isy1	InterPro:Isy1_sf	UniProt:M1A9U9	PFAM:PF06246	EnsemblPlantsGene:PGSC0003DMG400006987	PGSC:PGSC0003DMG400006987
EnsemblPlants:PGSC0003DMT400017978	PANTHER:PTHR13021	SUPFAM:SSF140102	UniParc:UPI0002952DE2	RefSeq:XP_006345505.1	SEG:seg

Description

Pre-mRNA-splicing factor isy-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400006987]

Coordinates

chr5:-:45667733..45676099

Molecular Weight (calculated)

35424.6 Da

IEP (calculated)

5.943

GRAVY (calculated)

-1.063

Length

299 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRFITMKE EEKKKPKERR PYLASECRDL AEADKWRQQI MREIGRKVTE IQNEGLGEHR LRDLNDEINK LIREKVHWER RIIELGGPNY
101: TKYSAKMTDL DGNIVDVPNP GGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRRTRYDIYK RIDASYYGYR DEEDGILVKL EGPAEKKMRA AAVKEWMEME
201: EIKREAKKAV KSGEVVEVGL GSKILFEEEE DVIEEERMER EREEKDREKE YVVHVPLPDE KEIERMVVEH KKMELLSKYA SEDLMEEQME AKAMLNIQR

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.