Factsheet for TraesCS3B01G609900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G532300.1	Wheat	nucleus	69.47	89.59
TraesCS6B01G244300.1	Wheat	nucleus	83.51	76.53
HORVU6Hr1G013160.1	Barley	cytosol	79.3	74.83
HORVU6Hr1G013130.1	Barley	cytosol	78.6	74.17
Os02t0602500-02	Rice	nucleus	78.95	72.35
HORVU6Hr1G009190.1	Barley	cytosol	78.6	71.79
EES07109	Sorghum	nucleus	76.49	70.55
Zm00001d017131_P001	Maize	nucleus	76.14	69.77
AT3G18790.1	Thale cress	nucleus	63.51	60.33
VIT_04s0044g00540.t01	Wine grape	nucleus	62.81	60.07
KRH15273	Soybean	nucleus	62.81	59.87
KRH38151	Soybean	endoplasmic reticulum	62.81	59.87
KRH55159	Soybean	nucleus	63.16	59.8
CDX92274	Canola	nucleus	55.09	58.8
Bra022357.1-P	Field mustard	nucleus	61.05	58.59
PGSC0003DMT400017978	Potato	nucleus	61.4	58.53
CDX99314	Canola	nucleus	54.74	58.43
Solyc05g051070.2.1	Tomato	nucleus	61.05	56.13
CDX95495	Canola	nucleus	14.74	51.22
Bra037559.1-P	Field mustard	cytosol	24.56	46.05
CDY18546	Canola	cytosol	23.51	45.58
HORVU0Hr1G015130.1	Barley	cytosol	41.75	39.27
GSMUA_Achr9P16220_001	Banana	cytosol	60.35	32.03

Protein Annotations

EnsemblPlants:TraesCS3B01G609900.1	EnsemblPlantsGene:TraesCS3B01G609900	Gene3D:1.10.287.660	GO:GO:0000350	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012	InterPro:Isy1
InterPro:Isy1_sf	ncoils:Coil	PANTHER:PTHR13021	PFAM:PF06246	SEG:seg	SUPFAM:SSF140102
MapMan:16.4.5.2.4	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:828781704..828782561

Molecular Weight (calculated)

32415.1 Da

IEP (calculated)

6.421

GRAVY (calculated)

-0.844

Length

285 amino acids

Sequence
(BLAST)

001: MARNEEKAQS LLNRFTTMKQ EEKSKPRERR PYLASQCRDL ADADRWRGEV LREIGVRLAE IQNEGLGEHR LRDLNDQINK LLRERSHWER RILELGGHDY
101: SRSSNAALMT DLDGNIVAIP NPSGRGPGYR YFGAAKKLPG VRELFDKALD VRKRGTRYGI HKRINAGYCR YYYYDDEDGA LEPHEAAAEK RMRHEVVTEW
201: HRVAREAMKN VASGEVAAAA GGSGGEAATA REVLFEEVEE EVEEEIERTV LEKKEELLSK YTSDALQGEL MGAKEICSTC NARTS

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.