CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037559.1-P	Field mustard	cytosol	92.52	89.47
CDX95495	Canola	nucleus	23.13	41.46
AT3G18790.1	Thale cress	nucleus	82.31	40.33
PGSC0003DMT400017978	Potato	nucleus	73.47	36.12
VIT_04s0044g00540.t01	Wine grape	nucleus	72.11	35.57
Solyc05g051070.2.1	Tomato	nucleus	72.79	34.52
KRH15273	Soybean	nucleus	69.39	34.11
KRH38151	Soybean	endoplasmic reticulum	68.71	33.78
CDX92274	Canola	nucleus	61.22	33.71
KRH55159	Soybean	nucleus	68.71	33.55
CDX99314	Canola	nucleus	60.54	33.33
TraesCS6B01G244300.1	Wheat	nucleus	66.67	31.51
TraesCS6D01G197000.1	Wheat	nucleus	66.67	31.51
Zm00001d017131_P001	Maize	nucleus	65.99	31.19
TraesCS6A01G214300.1	Wheat	nucleus	65.99	31.19
HORVU6Hr1G013130.1	Barley	cytosol	63.95	31.13
HORVU6Hr1G013160.1	Barley	cytosol	63.95	31.13
EES07109	Sorghum	nucleus	65.31	31.07
Os02t0602500-02	Rice	nucleus	64.63	30.55
HORVU6Hr1G009190.1	Barley	cytosol	63.95	30.13
HORVU6Hr1G054640.2	Barley	mitochondrion	66.67	27.53
HORVU0Hr1G015130.1	Barley	cytosol	51.7	25.08
TraesCS3B01G609900.1	Wheat	nucleus	45.58	23.51
TraesCS3A01G532300.1	Wheat	nucleus	29.93	19.91
GSMUA_Achr9P16220_001	Banana	cytosol	55.78	15.27
Zm00001d020905_P001	Maize	nucleus	10.2	5.62
Zm00001d007811_P001	Maize	cytosol	5.44	5.44
Zm00001d042413_P001	Maize	cytosol	12.93	3.49

Protein Annotations

EnsemblPlants:CDY18546	EnsemblPlantsGene:GSBRNA2T00005575001	GO:GO:0000350	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	InterPro:Isy1	InterPro:Isy1_sf	ncoils:Coil	PANTHER:PTHR13021
PFAM:PF06246	ProteinID:CDY18546	ProteinID:CDY18546.1	SEG:seg	SUPFAM:SSF140102	UniParc:UPI0004EEEAA1
UniProt:A0A078FZW5	MapMan:35.2	:	:	:	:

Description

BnaA01g26490DBnaA01g26490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZW5]

Coordinates

chrLK032086:+:434747..435531

Molecular Weight (calculated)

17622.2 Da

IEP (calculated)

7.612

GRAVY (calculated)

-1.101

Length

147 amino acids

Sequence
(BLAST)

001: MARNEEKAQS MLNRFVTMKE SENKKPVQRR PYLASECRDL ADADKWRHQI MREISRKVRR EARRGAAEVV SVGAAKEVLF EEEERKERER EEEEKEREFV
101: VHVPLPDEKE IEKMVLLKKK MELLREYASE DLVQQEKEAK AMLNIHR

Best Arabidopsis Sequence Match ( AT3G18790.1 )
(BLAST)

001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR

Arabidopsis Description

AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.