Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
24677780
plasma membrane: 27341663 |
msms PMID:
24677780
doi
State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07109 | Sorghum | nucleus | 98.39 | 99.03 |
| Os02t0602500-02 | Rice | nucleus | 92.6 | 92.6 |
| TraesCS6D01G197000.1 | Wheat | nucleus | 90.03 | 90.03 |
| TraesCS6B01G244300.1 | Wheat | nucleus | 90.03 | 90.03 |
| TraesCS6A01G214300.1 | Wheat | nucleus | 89.39 | 89.39 |
| HORVU6Hr1G013160.1 | Barley | cytosol | 81.99 | 84.44 |
| HORVU6Hr1G009190.1 | Barley | cytosol | 84.24 | 83.97 |
| TraesCS3A01G532300.1 | Wheat | nucleus | 59.49 | 83.71 |
| HORVU6Hr1G013130.1 | Barley | cytosol | 81.03 | 83.44 |
| HORVU6Hr1G054640.2 | Barley | mitochondrion | 90.35 | 78.93 |
| TraesCS3B01G609900.1 | Wheat | nucleus | 69.77 | 76.14 |
| KRH15273 | Soybean | nucleus | 71.38 | 74.25 |
| KRH38151 | Soybean | endoplasmic reticulum | 71.06 | 73.91 |
| KRH55159 | Soybean | nucleus | 71.06 | 73.42 |
| AT3G18790.1 | Thale cress | nucleus | 70.1 | 72.67 |
| VIT_04s0044g00540.t01 | Wine grape | nucleus | 69.13 | 72.15 |
| Bra022357.1-P | Field mustard | nucleus | 68.17 | 71.38 |
| PGSC0003DMT400017978 | Potato | nucleus | 67.52 | 70.23 |
| CDX92274 | Canola | nucleus | 57.88 | 67.42 |
| Solyc05g051070.2.1 | Tomato | nucleus | 66.88 | 67.1 |
| CDX99314 | Canola | nucleus | 57.23 | 66.67 |
| Bra037559.1-P | Field mustard | cytosol | 32.48 | 66.45 |
| CDY18546 | Canola | cytosol | 31.19 | 65.99 |
| CDX95495 | Canola | nucleus | 14.47 | 54.88 |
| Zm00001d007811_P001 | Maize | cytosol | 22.51 | 47.62 |
| HORVU0Hr1G015130.1 | Barley | cytosol | 45.98 | 47.19 |
| Zm00001d020905_P001 | Maize | nucleus | 39.55 | 46.07 |
| GSMUA_Achr9P16220_001 | Banana | cytosol | 66.24 | 38.36 |
| Zm00001d042413_P001 | Maize | cytosol | 41.16 | 23.53 |
Protein Annotations
| Gene3D:1.10.287.660 | EntrezGene:100282530 | MapMan:16.4.5.2.4 | ProteinID:AQK72409.1 | UniProt:B6T8I4 | ncoils:Coil |
| EMBL:EU961299 | GO:GO:0000350 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:Helix_hairpin_bin_sf | InterPro:IPR029012 | InterPro:Isy1 | InterPro:Isy1_sf | PFAM:PF06246 |
| PANTHER:PTHR13021 | SUPFAM:SSF140102 | UniParc:UPI000182C4DA | EnsemblPlantsGene:Zm00001d017131 | EnsemblPlants:Zm00001d017131_P001 | EnsemblPlants:Zm00001d017131_T001 |
| SEG:seg | : | : | : | : | : |
Description
Pre-mRNA-splicing factor ISY1
Coordinates
chr5:-:186481657..186482592
Molecular Weight (calculated)
36495.3 Da
IEP (calculated)
6.719
GRAVY (calculated)
-1.108
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNEEKAQS MLNRFITMKQ EEKRKPRERR PYLASECRDL ADAERWRSEI LREIGAKVAE IQNEGLGEHR LRDLNDEINK LLRERGHWER RIVELGGRDY
101: SRSSNAPLMT DLDGNIVAVP NPSGRGPGYR YFGAARKLPG VRELFDKPPE MRKRRTRYEI HKRINAGYYG YYDDEDGVLE RLEGPAEKRM REEIVSEWHR
201: VERVRREAMK GVMSGEVAAA GGRSGEAARE VLFEGVEEEV EEERKREEEK REREKGEEVG REFVAHVPLP DEKEIERMVL ERKKKELLSK YASDSLLVEQ
301: EEAKEMLNVR R
101: SRSSNAPLMT DLDGNIVAVP NPSGRGPGYR YFGAARKLPG VRELFDKPPE MRKRRTRYEI HKRINAGYYG YYDDEDGVLE RLEGPAEKRM REEIVSEWHR
201: VERVRREAMK GVMSGEVAAA GGRSGEAARE VLFEGVEEEV EEERKREEEK REREKGEEVG REFVAHVPLP DEKEIERMVL ERKKKELLSK YASDSLLVEQ
301: EEAKEMLNVR R
001: MARNEEKAQS MLNRFITQKE SEKKKPKERR PYLASECRDL AEADKWRQQI LREIGSKVAE IQNEGLGEHR LRDLNDEINK LLRERYHWER RIVELGGHNY
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
101: SKHSAKMTDL EGNIIDVPNP SGRGPGYRYF GAAKKLPGVR ELFEKPPELR KRKTRYDIYK RIDASYYGYR DDEDGILEKL ERKSEGGMRK RSVEEWRRLD
201: EVRKEARKGA SEVVSVGAAA AAAREVLFEE EEDVVEEERM EREKEEEKER EFVVHVPLPD EKEIEKMVLE KKKMDLLSKY ASEDLVEQQT EAKSMLNIHR
Arabidopsis Description
AT3G18790 protein [Source:UniProtKB/TrEMBL;Acc:Q9LS97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.