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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra004783.1-P
Bra005086.1-P
Bra005504.1-P
Bra007513.1-P
Bra010168.1-P
Bra012753.1-P
Bra013431.1-P
Bra014507.1-P
Bra015322.1-P
Bra017100.1-P
Bra019919.1-P
Bra019993.1-P
Bra020619.1-P
Bra021132.1-P
Bra021701.1-P
Bra021844.1-P
Bra022357.1-P
Bra023925.1-P
Bra024281.1-P
Bra025448.1-P
Bra025462.1-P
Bra027160.1-P
Bra027209.1-P
Bra028504.1-P
Bra028525.1-P
Bra030575.1-P
Bra030679.1-P
Bra030798.1-P
Bra035741.1-P
Bra037559.1-P
Bra037770.1-P
Bra040328.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G18165.1 Bra015322.1-P AT1G04510.1 19629177
AT3G18165.1 Bra030575.1-P AT1G04510.1 19629177
AT3G18165.1 Bra030679.1-P AT1G07360.1 19629177
AT3G18165.1 Bra019993.1-P AT1G09770.1 17575050
AT3G18165.1 Bra027160.1-P AT1G09770.1 17575050
AT3G18165.1 Bra030798.1-P AT1G09770.1 17575050
AT3G18165.1 Bra019993.1-P AT1G09770.1 19629177
AT3G18165.1 Bra027160.1-P AT1G09770.1 19629177
AT3G18165.1 Bra030798.1-P AT1G09770.1 19629177
AT3G18165.1 Bra019919.1-P AT1G10580.1 19629177
AT3G18165.1 Bra010168.1-P AT1G32490.1 19629177
AT3G18165.1 Bra040328.1-P AT1G32490.1 19629177
AT3G18165.1 Bra013431.1-P AT1G80070.1 19629177
AT3G18165.1 Bra021701.1-P AT1G80070.1 19629177
AT3G18165.1 Bra005504.1-P AT2G33340.1 19629177
AT3G18165.1 Bra021844.1-P AT2G33340.1 19629177
AT3G18165.1 Bra005086.1-P AT2G38770.1 19629177
AT3G18165.1 Bra017100.1-P AT2G38770.1 19629177
AT3G18165.1 Bra004783.1-P AT2G43770.1 19629177
AT3G18165.1 Bra021132.1-P AT3G15730.1 19629177
AT3G18165.1 Bra027209.1-P AT3G15730.1 19629177
AT3G18165.1 Bra022357.1-P AT3G18790.1 19629177
AT3G18165.1 Bra037559.1-P AT3G18790.1 19629177
AT3G18165.1 Bra023925.1-P AT3G20820.1 19629177
AT3G18165.1 Bra035741.1-P AT3G20820.1 19629177
AT3G18165.1 Bra007513.1-P AT3G60190.1 19629177
AT3G18165.1 Bra014507.1-P AT3G60190.1 19629177
AT3G18165.1 Bra012753.1-P AT4G15900.1 19629177
AT3G18165.1 Bra020619.1-P AT5G28740.1 19629177
AT3G18165.1 Bra025462.1-P AT5G41770.1 19629177
AT3G18165.1 Bra028504.1-P AT5G41770.1 19629177
AT3G18165.1 Bra025448.1-P AT5G42080.1 19629177
AT3G18165.1 Bra028525.1-P AT5G42080.1 19629177
AT3G18165.1 Bra024281.1-P AT5G64270.1 19629177
AT3G18165.1 Bra037770.1-P AT5G64270.1 19629177
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92209 Canola nucleus 100.0 100.0
Bra021297.1-P Field mustard cytosol 94.47 94.47
AT3G18165.1 Thale cress cytosol 90.91 90.91
Solyc03g119010.2.1 Tomato nucleus 62.85 66.25
PGSC0003DMT400014424 Potato nucleus 65.22 65.74
KRH60495 Soybean endoplasmic reticulum, nucleus 61.26 61.26
KRH41788 Soybean nucleus 59.29 59.52
VIT_17s0000g02840.t01 Wine grape cytosol, mitochondrion, nucleus 48.62 59.42
GSMUA_Achr3P18370_001 Banana cytosol 32.02 56.64
TraesCS3A01G181200.1 Wheat nucleus 54.55 53.91
EES00531 Sorghum cytosol 53.75 53.54
TraesCS3B01G211300.1 Wheat cytosol 53.75 53.12
TraesCS3D01G186100.1 Wheat cytosol 53.75 53.12
HORVU3Hr1G037080.1 Barley plastid 53.36 45.3
Zm00001d040357_P001 Maize cytosol 54.55 38.23
GSMUA_Achr3P18380_001 Banana cytosol 26.09 32.67
Protein Annotations
EnsemblPlants:Bra022288.1EnsemblPlants:Bra022288.1-PEnsemblPlantsGene:Bra022288GO:GO:0006139GO:GO:0006397GO:GO:0008150
GO:GO:0008152GO:GO:0009987InterPro:SPF27ncoils:CoilPANTHER:PTHR13296PFAM:PF05700
UniParc:UPI000254736AUniProt:M4E0J1MapMan:16.4.5.1.1:::
Description
AT3G18165 (E=1e-134) MOS4 | MOS4 (Modifier of snc1,4)
Coordinates
chrA05:-:18616012..18617745
Molecular Weight (calculated)
29552.1 Da
IEP (calculated)
5.321
GRAVY (calculated)
-0.888
Length
253 amino acids
Sequence
(BLAST)
001: MATNNGDVLM LEAAPEATKP WASAANAEVI DALPYIDDDY GNPLIKAEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFE NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKHE LPPASKKNDD AAWKQYLHKT QRSLQQKMIE LENLEMMSKQ GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTAYELNA
201: LSQEWRQLCV KNMEIQSACA VLETQIDLLK REASERGWNL EEKLESVKPL QSQ
Best Arabidopsis Sequence Match ( AT3G18165.1 )
(BLAST)
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.