Factsheet for Bra005504.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17165	Canola	cytosol	100.0	100.0
Bra021844.1-P	Field mustard	nucleus	80.57	95.7
AT2G33340.1	Thale cress	cytosol	92.76	92.76
Bra015322.1-P	Field mustard	cytosol	82.86	83.33
VIT_05s0049g01840.t01	Wine grape	cytosol	76.76	76.91
PGSC0003DMT400044280	Potato	cytosol	74.29	74.86
KRG90340	Soybean	nucleus	74.29	74.29
Zm00001d021987_P001	Maize	cytosol	8.19	74.14
Solyc09g090660.2.1	Tomato	cytosol, nucleus	73.33	73.9
KRH33584	Soybean	nucleus	73.52	73.52
PGSC0003DMT400075431	Potato	cytosol	61.9	72.06
GSMUA_Achr11P...	Banana	cytosol	72.0	71.86
Bra030575.1-P	Field mustard	cytosol	77.33	70.73
KXG38386	Sorghum	cytosol	70.67	70.53
GSMUA_Achr8P12630_001	Banana	cytosol	70.67	70.53
Os10t0466300-01	Rice	nucleus	70.1	69.83
TraesCS1B01G165900.2	Wheat	cytosol	69.9	69.64
HORVU1Hr1G039050.13	Barley	cytosol	69.52	69.13
TraesCS1A01G148000.1	Wheat	cytosol	69.9	68.98
TraesCS1D01G145900.2	Wheat	cytosol	69.71	68.8
TraesCS4B01G341300.1	Wheat	cytosol	68.19	68.19
TraesCS4D01G337200.1	Wheat	cytosol	68.38	67.61
TraesCS5A01G510600.1	Wheat	cytosol	68.0	67.23
HORVU4Hr1G083960.3	Barley	plastid	68.38	61.26

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra005504	EnsemblPlants:Bra005504.1	EnsemblPlants:Bra005504.1-P
ncoils:Coil	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4CMR6	PFAM:PF00400	PFAM:PF08606	PFscan:PS50082
PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320
SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI0002547403	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING/FYVE/PHD	:	:

Description

AT2G33340 (E=3e-286) | nucleotide binding / ubiquitin-protein ligase

Coordinates

chrA05:+:5854472..5859143

Molecular Weight (calculated)

56649.7 Da

IEP (calculated)

5.898

GRAVY (calculated)

-0.246

Length

525 amino acids

Sequence
(BLAST)

001: MNCAISGEVP EVPVVSTKSG LLFERRLIET HISDYGKCPV TGEPLTIDDI VPIKTGKVLK PKLLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAPLS NGKRAAGDEE TGPDAKKLCP GISADIITEL TDCNAALSQK RKKRQIPETL
201: ASIDALGRFT QLSSHPLHKT NKPGICSMDI LYSKDVIATG GVDATAVIFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRV WRDSGDGQYA
301: CGHTLNDHSE EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAKVADD SEKVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAR FDGHTGEVTS
401: ISFSENGYFL ATAAEDGVKL WDLRKLRNFR SFSSADANSV EFDPSGSYLG IAASDIRLYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGP DAQYVAVGSM
501: DRNLRIFGLP GDEKANADDD SAQDS

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.