Factsheet for PGSC0003DMT400075431

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029953

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	PGSC0003DMT400029953	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044280	Potato	cytosol	85.14	73.7
VIT_05s0049g01840.t01	Wine grape	cytosol	79.38	68.32
KRG90340	Soybean	nucleus	75.83	65.14
KRH33584	Soybean	nucleus	74.94	64.38
Bra021844.1-P	Field mustard	nucleus	62.08	63.35
Zm00001d021987_P001	Maize	cytosol	7.98	62.07
Bra005504.1-P	Field mustard	cytosol	72.06	61.9
CDY17165	Canola	cytosol	72.06	61.9
AT1G04510.1	Thale cress	cytosol	70.95	61.19
CDY37731	Canola	cytosol	71.18	61.14
KXG38386	Sorghum	cytosol	70.73	60.65
GSMUA_Achr8P12630_001	Banana	cytosol	70.73	60.65
CDY23752	Canola	cytosol	70.51	60.57
Bra015322.1-P	Field mustard	cytosol	70.07	60.54
CDX89818	Canola	cytosol	70.07	60.54
AT2G33340.1	Thale cress	cytosol	70.07	60.19
GSMUA_Achr11P...	Banana	cytosol	69.84	59.89
Os10t0466300-01	Rice	nucleus	69.84	59.77
TraesCS1B01G165900.2	Wheat	cytosol	68.74	58.82
HORVU1Hr1G039050.13	Barley	cytosol	68.51	58.52
TraesCS4B01G341300.1	Wheat	cytosol	68.07	58.48
TraesCS1A01G148000.1	Wheat	cytosol	68.74	58.27
TraesCS1D01G145900.2	Wheat	cytosol	68.51	58.08
TraesCS4D01G337200.1	Wheat	cytosol	67.85	57.63
CDY15510	Canola	plastid	70.07	57.45
TraesCS5A01G510600.1	Wheat	cytosol	67.63	57.44
CDY18239	Canola	endoplasmic reticulum, plastid	69.84	57.17
CDY19484	Canola	plastid	71.62	53.04
CDX86629	Canola	plastid	61.42	52.36
HORVU4Hr1G083960.3	Barley	plastid	67.63	52.05
CDY49475	Canola	extracellular	11.97	51.43
Bra030575.1-P	Field mustard	cytosol	64.08	50.35
CDY29722	Canola	mitochondrion	9.76	27.33

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	ncoils:Coil	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR001680
InterPro:IPR003613	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1CV65	PFAM:PF00400	PFAM:PF08606
EnsemblPlantsGene:PGSC0003DMG400029342	PGSC:PGSC0003DMG400029342	EnsemblPlants:PGSC0003DMT400075431	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698
PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002951AE8
InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

Pre-mRNA-splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400029342]

Coordinates

chr12:+:58578317..58588040

Molecular Weight (calculated)

49176.2 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.278

Length

451 amino acids

Sequence
(BLAST)

001: MLVLDYGKCP VTGEPLTTDD IIPVKTGKIV KPRPVQAASI PGMLGMFQIE WDGLMLSNFV LEQQLHTARQ ELSHALYQHD AACRVIARLK KERDEARELL
101: AQAERQVPMA ATTSAANGAA LSYGNRATEE EEMDPGSKKI RPGISGDVIK ELQDCNAVIS QQRKRRQIPA TLAPVDALKR YTQLNSYPLH KTNKPGILSL
201: DIHYPKDIIA TGGVDSTAVV FDLPSGQIVS TLSHSKKVTS VRFAAEGELV VTGSADKTVR VWQNSENGNY DCRHTLKDHS AEVQAVTVHA TNKYFVSASL
301: DGTWCFYDLA SGLCLAQVAD ASESEGYTSA AFHPDGLILG AGTSGAQVKI WDVKSQANVA RFEGHVGAVT AISFSENGYF LAPAAHDNVK LWDLRKLRNF
401: RTFSLYDEDT ATQTGKATCL KFGPDAKYIA VGSMDRNLRI FGLPEEDQSE S

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.