Factsheet for TraesCS1D01G145900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G307100.1
TraesCS5A01G450800.1
TraesCS5B01G307500.2
TraesCS5B01G459200.1
TraesCS5D01G314000.1
TraesCS5D01G460800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	TraesCS5A01G307100.1	AT1G09770.1	19629177
AT1G04510.1	TraesCS5A01G450800.1	AT1G09770.1	19629177
AT1G04510.1	TraesCS5B01G307500.2	AT1G09770.1	19629177
AT1G04510.1	TraesCS5B01G459200.1	AT1G09770.1	19629177
AT1G04510.1	TraesCS5D01G314000.1	AT1G09770.1	19629177
AT1G04510.1	TraesCS5D01G460800.1	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G148000.1	Wheat	cytosol	99.81	99.81
TraesCS1B01G165900.2	Wheat	cytosol	98.87	99.81
HORVU1Hr1G039050.13	Barley	cytosol	97.74	98.48
Zm00001d032763_P003	Maize	cytosol	89.47	90.49
KXG38386	Sorghum	cytosol	89.47	90.49
Zm00001d014078_P001	Maize	cytosol	84.96	82.78
TraesCS4D01G337200.1	Wheat	cytosol	82.14	82.3
GSMUA_Achr11P...	Banana	cytosol	78.38	79.28
GSMUA_Achr8P12630_001	Banana	cytosol	78.01	78.9
VIT_05s0049g01840.t01	Wine grape	cytosol	73.5	74.62
Zm00001d017109_P001	Maize	cytosol	24.81	72.53
PGSC0003DMT400044280	Potato	cytosol	70.86	72.36
KRG90340	Soybean	nucleus	71.24	72.19
Solyc09g090660.2.1	Tomato	cytosol, nucleus	70.68	72.17
KRH33584	Soybean	nucleus	70.86	71.81
Zm00001d011008_P001	Maize	extracellular	21.8	71.17
AT1G04510.1	Thale cress	cytosol	69.74	70.94
AT2G33340.1	Thale cress	cytosol	69.36	70.29
CDY37731	Canola	cytosol	69.36	70.29
CDX89818	Canola	cytosol	68.8	70.11
Bra015322.1-P	Field mustard	cytosol	68.8	70.11
CDY23752	Canola	cytosol	69.17	70.1
Bra005504.1-P	Field mustard	cytosol	68.8	69.71
CDY17165	Canola	cytosol	68.8	69.71
Bra021844.1-P	Field mustard	nucleus	57.89	69.68
PGSC0003DMT400075431	Potato	cytosol	58.08	68.51
CDY15510	Canola	plastid	69.17	66.91
CDY18239	Canola	endoplasmic reticulum, plastid	68.05	65.7
CDY19484	Canola	plastid	68.42	59.77
CDX86629	Canola	plastid	59.4	59.74
Bra030575.1-P	Field mustard	cytosol	63.35	58.71
CDY49475	Canola	extracellular	8.46	42.86
CDY29722	Canola	mitochondrion	7.33	24.22

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0000398	GO:GO:0000974
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630
InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19
InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1D01G145900
EnsemblPlants:TraesCS1D01G145900.2	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:Znf_RING/FYVE/PHD	TIGR:cd00200	TIGR:cd16656	:	:	:

Description

No Description!

Coordinates

chr1D:+:201485532..201496109

Molecular Weight (calculated)

58177.2 Da

IEP (calculated)

6.075

GRAVY (calculated)

-0.273

Length

532 amino acids

Sequence
(BLAST)

001: MICAISGEVP DEPVVSKRSG LLFERRLIER YIEDHGKCPV TKEELSMDDI VLVKTNKVVR PRPLQAASIP GLLGIFQNEW DALMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRALLA LAERQIPASM AGVAPAAVVS NGKRALLDTA MEDEIGPDGK KIRPGINPVM IDELTECNTM LSAQRKKRQV
201: PPSLASIDEL ERYTQISSHP LHKTNKPGIL SMDIHPSKDI VATGGIDTNA VLFDRTSGQI LCTLAGHSKK ITTLKFVPRD ELVVTGSADK TVRIWQGGEE
301: GNYSCIHTLK DHTAEVEAVT VHATQKYFVT AAKDNTWCFY DISTGSCLSQ VGEASGQEGY TSASFHPDGL ILGTGTTEAV VKIWDVKTQS NVAKFEGHAG
401: PVTAMSFSEN GYFLATAALD GVKLWDLRKL RNFRTFSPYD SDTPTNSVEF DFSGTYLAVA GSDIRVYQVA NVKTEWNLIK TLPDLSGTGK VTSAKFGTDA
501: KYIAVGSMDR NLRIFGPPGD DQMDDDAKPS AE

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.