CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92639
KRH34143

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	KRG92639	AT1G09770.1	19629177
AT1G04510.1	KRH34143	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33584	Soybean	nucleus	98.29	98.29
VIT_05s0049g01840.t01	Wine grape	cytosol	85.33	85.5
PGSC0003DMT400044280	Potato	cytosol	81.14	81.77
Solyc09g090660.2.1	Tomato	cytosol, nucleus	80.76	81.38
PGSC0003DMT400075431	Potato	cytosol	65.14	75.83
CDY37731	Canola	cytosol	74.67	74.67
CDY23752	Canola	cytosol	74.48	74.48
AT1G04510.1	Thale cress	cytosol	74.1	74.38
Bra005504.1-P	Field mustard	cytosol	74.29	74.29
CDY17165	Canola	cytosol	74.29	74.29
GSMUA_Achr11P...	Banana	cytosol	74.29	74.14
Zm00001d021987_P001	Maize	cytosol	8.19	74.14
GSMUA_Achr8P12630_001	Banana	cytosol	73.9	73.76
AT2G33340.1	Thale cress	cytosol	73.71	73.71
Bra021844.1-P	Field mustard	nucleus	61.52	73.08
Os10t0466300-01	Rice	nucleus	73.33	73.06
KXG38386	Sorghum	cytosol	73.14	73.0
Bra015322.1-P	Field mustard	cytosol	72.57	72.99
CDX89818	Canola	cytosol	72.57	72.99
TraesCS1B01G165900.2	Wheat	cytosol	72.38	72.11
TraesCS1A01G148000.1	Wheat	cytosol	72.38	71.43
HORVU1Hr1G039050.13	Barley	cytosol	71.81	71.4
TraesCS1D01G145900.2	Wheat	cytosol	72.19	71.24
TraesCS4B01G341300.1	Wheat	cytosol	70.67	70.67
TraesCS5A01G510600.1	Wheat	cytosol	70.86	70.06
TraesCS4D01G337200.1	Wheat	cytosol	70.86	70.06
CDY15510	Canola	plastid	72.19	68.91
CDY18239	Canola	endoplasmic reticulum, plastid	72.19	68.78
CDY19484	Canola	plastid	74.48	64.2
HORVU4Hr1G083960.3	Barley	plastid	70.48	63.14
Bra030575.1-P	Field mustard	cytosol	67.05	61.32
CDX86629	Canola	plastid	61.33	60.87
CDY49475	Canola	extracellular	9.71	48.57
CDY29722	Canola	mitochondrion	8.76	28.57

Protein Annotations

EntrezGene:100527039	MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	EMBL:ACUP02012601	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G084500	GO:GO:0000349	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0061630	GO:GO:0071006	UniProt:I1NEN5	InterPro:IPR001680	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRG90340	ProteinID:KRG90340	ProteinID:KRG90340.1
PFAM:PF00400	PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995
InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850
UniParc:UPI000233DA01	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:31664877..31673646

Molecular Weight (calculated)

57092.3 Da

IEP (calculated)

6.563

GRAVY (calculated)

-0.290

Length

525 amino acids

Sequence
(BLAST)

001: MNCSISGEVP EEPVVSRNSG LLFEKRLIER HISDYGKCPI TGEPLTMDDI VPIKTGKIVK PRPVQAASIP GMLGMFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDEARSLLA QAERQFPVSA PNAITANAPV LSNGKRAAED EDLAPGAKKI HPGISSSIIS ELTDCNAALS QQRKKRQIPP
201: TLAPVEALEA YTQISSHPFH KTNKQGIISL DILYSKDLIA TGGIDTNAVI FDRPSGQILS TLSGHSKKVT SVKFVAQGES FLTASADKTV RLWQGSDDGN
301: YNCRHILKDH SAEVQAVTVH ATNNYFVTAS LDGSWCFYEL SSGTCLTQVY DTSGSSEGYT SAAFHPDGLI LGTGTTESLV KIWDVKSQAN VARFDGHAGP
401: VTAISFSENG YFLATAAHDG VKLWDLRKLK NFRNFAPYDS ETPTSSVEFD HSGSYLAVAG SDIRIYQVAN VKSEWNCIKT FPDLSGTGKN TCVKFGPDSK
501: YIAVGSMDRN LRIFGLPGED APTES

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.