Factsheet for GSMUA_Achr8P12630_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P23340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	GSMUA_Achr9P23340_001	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	92.02	92.02
Zm00001d032763_P003	Maize	cytosol	80.42	80.42
KXG38386	Sorghum	cytosol	80.23	80.23
Os10t0466300-01	Rice	nucleus	80.04	79.89
TraesCS1B01G165900.2	Wheat	cytosol	79.09	78.94
TraesCS5A01G510600.1	Wheat	cytosol	79.28	78.53
TraesCS4D01G337200.1	Wheat	cytosol	79.28	78.53
HORVU1Hr1G039050.13	Barley	cytosol	78.71	78.41
TraesCS4B01G341300.1	Wheat	cytosol	78.14	78.29
TraesCS1A01G148000.1	Wheat	cytosol	79.09	78.2
TraesCS1D01G145900.2	Wheat	cytosol	78.9	78.01
Solyc09g090660.2.1	Tomato	cytosol, nucleus	75.29	76.01
PGSC0003DMT400044280	Potato	cytosol	75.29	76.01
VIT_05s0049g01840.t01	Wine grape	cytosol	75.29	75.57
Zm00001d014078_P001	Maize	cytosol	77.19	74.36
KRH33584	Soybean	nucleus	73.76	73.9
KRG90340	Soybean	nucleus	73.76	73.9
PGSC0003DMT400075431	Potato	cytosol	60.65	70.73
AT2G33340.1	Thale cress	cytosol	70.53	70.67
Bra005504.1-P	Field mustard	cytosol	70.53	70.67
CDY23752	Canola	cytosol	70.53	70.67
CDY17165	Canola	cytosol	70.53	70.67
AT1G04510.1	Thale cress	cytosol	69.58	69.98
CDY37731	Canola	cytosol	69.77	69.9
Bra021844.1-P	Field mustard	nucleus	58.56	69.68
CDX89818	Canola	cytosol	68.82	69.35
Bra015322.1-P	Field mustard	cytosol	68.82	69.35
HORVU4Hr1G083960.3	Barley	plastid	77.19	69.28
Zm00001d017109_P001	Maize	cytosol	23.76	68.68
Zm00001d011008_P001	Maize	extracellular	20.72	66.87
CDY15510	Canola	plastid	69.39	66.36
CDY18239	Canola	endoplasmic reticulum, plastid	69.01	65.88
CDY19484	Canola	plastid	70.53	60.92
CDX86629	Canola	plastid	58.94	58.6
Bra030575.1-P	Field mustard	cytosol	63.88	58.54
CDY49475	Canola	extracellular	8.37	41.9
CDY29722	Canola	mitochondrion	7.98	26.09

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0000398	GO:GO:0000974
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630
EnsemblPlantsGene:GSMUA_Achr8G12630_001	EnsemblPlants:GSMUA_Achr8P12630_001	EnsemblPlants:GSMUA_Achr8T12630_001	InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR015943	InterPro:IPR017986	UniProt:M0TPW6	PFAM:PF00400	PFAM:PF04564	PFAM:PF08606
PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19
SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI0002968E29	InterPro:Ubox_domain
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

U-box domain-containing protein 72 [Source:GMGC_GENE;Acc:GSMUA_Achr8G12630_001]

Coordinates

chr8:+:9406796..9419285

Molecular Weight (calculated)

57295.3 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.237

Length

526 amino acids

Sequence
(BLAST)

001: MICAISGEVP EDPVLSKKSG LLFERRLIEH HIASHGKCPI TKEELTMDDL IPVKTNKVVK PRPLQAASIP GLLGMFQNEW DALMLSSFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDEARMLLA QAERQIPLLA ASAANATTAV SNGKRAAEDD LGPDGKKIRP GINPVIIAEL TDCNALLSGQ RKKRQIPTTL
201: ASVDALERYT QISSHPLHKT NKPGILSIDI DASKDIIATG GIDTNGVLFN RASGQMLSTL SGHSKKVTSV KFVPGNELIV TGSSDKTVRV WQGTENGNYD
301: CQHVMRDHTA EVQAVTVHAT QKYFVTASMD NTWCFYDLST GSCLTQVGEA STEEGYTSAS FHPDGLILGT GTTGAIVKIW DVKSQSNVAK FDGHVGSVTA
401: MSFSENGYFL ATAAMDGVKL WDLRKLRNFR SFAPYDPETP TNYVEFDLSG SYLAIAGSDV RVYQVANVKL EWNLIKILPD LSGTGKVSCV KFGADAKYMA
501: VGSMDRNLRI FGLPGDESEE PKSPDH

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.