Factsheet for Bra030575.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019993.1-P
Bra027160.1-P
Bra030798.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	Bra019993.1-P	AT1G09770.1	19629177
AT1G04510.1	Bra027160.1-P	AT1G09770.1	19629177
AT1G04510.1	Bra030798.1-P	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015322.1-P	Field mustard	cytosol	80.14	88.12
CDY15510	Canola	plastid	82.75	86.36
AT1G04510.1	Thale cress	cytosol	77.0	84.51
Bra021844.1-P	Field mustard	nucleus	60.45	78.51
Bra005504.1-P	Field mustard	cytosol	70.73	77.33
Zm00001d021987_P001	Maize	cytosol	6.97	68.97
VIT_05s0049g01840.t01	Wine grape	cytosol	62.72	68.7
PGSC0003DMT400044280	Potato	cytosol	61.15	67.37
KRG90340	Soybean	nucleus	61.32	67.05
Solyc09g090660.2.1	Tomato	cytosol, nucleus	60.63	66.79
KRH33584	Soybean	nucleus	60.28	65.9
KXG38386	Sorghum	cytosol	59.76	65.21
Os10t0466300-01	Rice	nucleus	59.76	65.09
GSMUA_Achr11P...	Banana	cytosol	59.23	64.64
TraesCS1B01G165900.2	Wheat	cytosol	58.88	64.14
PGSC0003DMT400075431	Potato	cytosol	50.35	64.08
HORVU1Hr1G039050.13	Barley	cytosol	58.88	64.02
GSMUA_Achr8P12630_001	Banana	cytosol	58.54	63.88
TraesCS1A01G148000.1	Wheat	cytosol	58.88	63.53
TraesCS1D01G145900.2	Wheat	cytosol	58.71	63.35
TraesCS4B01G341300.1	Wheat	cytosol	57.14	62.48
TraesCS4D01G337200.1	Wheat	cytosol	57.49	62.15
TraesCS5A01G510600.1	Wheat	cytosol	57.14	61.77
HORVU4Hr1G083960.3	Barley	plastid	56.97	55.8

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra030575	EnsemblPlants:Bra030575.1	EnsemblPlants:Bra030575.1-P
ncoils:Coil	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4EP55	PFAM:PF00400	PFAM:PF08606	PFscan:PS50082
PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320
SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI00025456F0	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT1G04510 (E=2e-207) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA08:-:21256132..21262196

Molecular Weight (calculated)

62781.7 Da

IEP (calculated)

9.106

GRAVY (calculated)

-0.358

Length

574 amino acids

Sequence
(BLAST)

001: MNCAVSGEVP VEPVVSKKTG LLYEKRLIER HISDYGKCPV TGELHTIADI VAIKTGKIIK PKPLHTASIP GLLGSFQTHD AACRVIARLK KERDEARQLL
101: SEAERQLPAA PEAATANATL SNGKRAADGG EQGPDAKKMR LGISTEVITE LTDCNAALSQ QRKKRQIPPT LASIDALEKF TQLSSHPLHK TNKPGIFSMD
201: ILHSKDVIAT GGIDTTAVLF DRASGQILST LTGHSKKVTS IKFVGDTDLV LTASSDKTVR IWGSSEDGNY ACRHTLKDHS AEVRAVTVHA TNKYFVSASL
301: DSTWCFYDMS SGLCLAQVTD DSEKVDYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHTGEIT SVSFSENGYF LATAALDGVR LWDLRKLKNF
401: RTFEFPDANS VEFDHSGSYL GIAASDIRVF QTASVKAEWN PVKTLPDLSG TGKATCVKFG PDAKYVAVGS MDRNLRIFAQ LRYIKEAREI RLAMQPLELI
501: KRVKEIQQEA STGHETDVKQ NTEAVDLSKR RKAFLPTNEE SSLKALEEWR KRKMERARQR DLEKTGGVSS SKTS

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.