CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15997
KXG34025

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	EES15997	AT1G09770.1	19629177
AT1G04510.1	KXG34025	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032763_P003	Maize	cytosol	96.39	96.39
TraesCS1B01G165900.2	Wheat	cytosol	90.68	90.51
HORVU1Hr1G039050.13	Barley	cytosol	90.11	89.77
TraesCS1A01G148000.1	Wheat	cytosol	90.68	89.66
TraesCS1D01G145900.2	Wheat	cytosol	90.49	89.47
Zm00001d014078_P001	Maize	cytosol	91.44	88.1
GSMUA_Achr11P...	Banana	cytosol	80.42	80.42
GSMUA_Achr8P12630_001	Banana	cytosol	80.23	80.23
VIT_05s0049g01840.t01	Wine grape	cytosol	75.86	76.14
Solyc09g090660.2.1	Tomato	cytosol, nucleus	72.81	73.51
PGSC0003DMT400044280	Potato	cytosol	72.81	73.51
KRG90340	Soybean	nucleus	73.0	73.14
KRH33584	Soybean	nucleus	72.62	72.76
AT1G04510.1	Thale cress	cytosol	70.91	71.32
CDX89818	Canola	cytosol	70.72	71.26
Bra015322.1-P	Field mustard	cytosol	70.72	71.26
AT2G33340.1	Thale cress	cytosol	70.72	70.86
PGSC0003DMT400075431	Potato	cytosol	60.65	70.73
CDY17165	Canola	cytosol	70.53	70.67
Bra005504.1-P	Field mustard	cytosol	70.53	70.67
CDY37731	Canola	cytosol	70.34	70.48
CDY23752	Canola	cytosol	70.15	70.29
Bra021844.1-P	Field mustard	nucleus	58.17	69.23
CDY15510	Canola	plastid	71.1	68.0
CDY18239	Canola	endoplasmic reticulum, plastid	69.96	66.79
CDY19484	Canola	plastid	70.15	60.59
Bra030575.1-P	Field mustard	cytosol	65.21	59.76
CDX86629	Canola	plastid	60.08	59.74
CDY49475	Canola	extracellular	9.32	46.67
CDY29722	Canola	mitochondrion	7.79	25.47

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	UniProt:A0A1B6QKE9	ncoils:Coil	GO:GO:0000398
GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0061630	InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KXG38386	ProteinID:KXG38386	ProteinID:KXG38386.1	PFAM:PF00400	PFAM:PF08606	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19
SMART:SM00320	SMART:SM00504	EnsemblPlantsGene:SORBI_3001G226000	SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI00081AE37F
InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:21606961..21616792

Molecular Weight (calculated)

57612.5 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.297

Length

526 amino acids

Sequence
(BLAST)

001: MICAISGEVP DEPVVSKKSG LLFERRLIER YVEDHGKCPV TKEDLTMDDI VPVKTNKVVK PRPLQAASIP GLLGIFQNEW DALMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDEARALLA LAERQIPASV PGAAPVAVVS NGKRAMEDEI GPDGKKIRPG INPVMIDELT ECNTMLSAQR KKRQVPPTLA
201: PIDALERYTQ ISSHPLHKTN KPGILSMDIH PSKDIVATGG IDTNAVLFDR ASGQILCTLT GHSKKITTLK FVPRDQLFVT GSADKTVRIW QENENGSYNC
301: VHTLKDHTAE VEAVTVHATQ KYFVSASKDN SWCFYDMSTG SCLTQVGEAS GQEGYTSAAF HPDGLILGTG TTDAVAKIWD VKTQSNVAKF EGHVGPVTAM
401: SFSENGYFLA TAAHDGVKLW DLRKLRNFRT FSPYDSDTPT NTVEFDFSGN YLAIGGSDIR VYQVANVKSE WNLIKTLPDL SGTGKVTSVK FGADAKYIAV
501: GSMDRNLRIF GLPGDDQMEE SNTAAE

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.