Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 6
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29722 | Canola | mitochondrion | 44.76 | 29.19 |
| PGSC0003DMT400075431 | Potato | cytosol | 51.43 | 11.97 |
| CDX89818 | Canola | cytosol | 59.05 | 11.88 |
| CDY15510 | Canola | plastid | 59.05 | 11.27 |
| CDY18239 | Canola | endoplasmic reticulum, plastid | 59.05 | 11.25 |
| CDX86629 | Canola | plastid | 56.19 | 11.15 |
| CDY23752 | Canola | cytosol | 53.33 | 10.67 |
| CDY37731 | Canola | cytosol | 53.33 | 10.67 |
| PGSC0003DMT400044280 | Potato | cytosol | 51.43 | 10.36 |
| CDY17165 | Canola | cytosol | 51.43 | 10.29 |
| Solyc09g090660.2.1 | Tomato | cytosol, nucleus | 50.48 | 10.17 |
| VIT_05s0049g01840.t01 | Wine grape | cytosol | 49.52 | 9.92 |
| KRG90340 | Soybean | nucleus | 48.57 | 9.71 |
| KRH33584 | Soybean | nucleus | 47.62 | 9.52 |
| KXG38386 | Sorghum | cytosol | 46.67 | 9.32 |
| GSMUA_Achr11P... | Banana | cytosol | 45.71 | 9.13 |
| TraesCS4B01G341300.1 | Wheat | cytosol | 44.76 | 8.95 |
| Os10t0466300-01 | Rice | nucleus | 44.76 | 8.92 |
| CDY19484 | Canola | plastid | 51.43 | 8.87 |
| TraesCS4D01G337200.1 | Wheat | cytosol | 43.81 | 8.66 |
| TraesCS1B01G165900.2 | Wheat | cytosol | 42.86 | 8.54 |
| HORVU1Hr1G039050.13 | Barley | cytosol | 42.86 | 8.52 |
| TraesCS5A01G510600.1 | Wheat | cytosol | 42.86 | 8.47 |
| TraesCS1A01G148000.1 | Wheat | cytosol | 42.86 | 8.46 |
| TraesCS1D01G145900.2 | Wheat | cytosol | 42.86 | 8.46 |
| GSMUA_Achr8P12630_001 | Banana | cytosol | 41.9 | 8.37 |
| HORVU4Hr1G083960.3 | Barley | plastid | 44.76 | 8.02 |
| Zm00001d021987_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A078IF02 | EnsemblPlants:CDY49475 | ProteinID:CDY49475 | ProteinID:CDY49475.1 |
| GO:GO:0000398 | GO:GO:0000974 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006464 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0061630 | EnsemblPlantsGene:GSBRNA2T00093128001 | InterPro:IPR001680 | InterPro:IPR015943 | PANTHER:PTHR43995 | InterPro:Prp19 |
| SMART:SM00320 | SUPFAM:SSF50978 | SignalP:SignalP-noTM | UniParc:UPI0004EED80A | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom_sf | : | : | : | : | : |
Description
BnaCnng17410DBnaCnng17410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF02]
Coordinates
chrLK032835:-:61839..63016
Molecular Weight (calculated)
12118.0 Da
IEP (calculated)
8.739
GRAVY (calculated)
0.356
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MTYCLIIVLL IVKTVHIWGS SEDWKYACRH ILKYHSAEVR AVTVHATNKY FVSASLDSSW CFYDMSSGLC FAQVRKKMGL FLLMFHLQGI MEKGSSTICI
101: LKWET
101: LKWET
001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS
Arabidopsis Description
PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.