Factsheet for Solyc09g090660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g009950.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	Solyc04g009950.2.1	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044280	Potato	cytosol	97.89	97.89
VIT_05s0049g01840.t01	Wine grape	cytosol	84.45	83.97
KRG90340	Soybean	nucleus	81.38	80.76
KRH33584	Soybean	nucleus	81.19	80.57
Zm00001d021987_P001	Maize	cytosol	8.45	75.86
GSMUA_Achr8P12630_001	Banana	cytosol	76.01	75.29
GSMUA_Achr11P...	Banana	cytosol	75.82	75.1
CDY17165	Canola	cytosol	73.9	73.33
Bra005504.1-P	Field mustard	cytosol	73.9	73.33
AT1G04510.1	Thale cress	cytosol	73.51	73.23
CDY23752	Canola	cytosol	73.7	73.14
CDY37731	Canola	cytosol	73.7	73.14
Os10t0466300-01	Rice	nucleus	73.7	72.87
KXG38386	Sorghum	cytosol	73.51	72.81
CDX89818	Canola	cytosol	72.55	72.41
Bra015322.1-P	Field mustard	cytosol	72.55	72.41
AT2G33340.1	Thale cress	cytosol	72.74	72.19
Bra021844.1-P	Field mustard	nucleus	61.04	71.95
TraesCS1B01G165900.2	Wheat	cytosol	72.36	71.54
TraesCS1A01G148000.1	Wheat	cytosol	72.36	70.86
TraesCS4B01G341300.1	Wheat	cytosol	71.4	70.86
HORVU1Hr1G039050.13	Barley	cytosol	71.78	70.83
TraesCS1D01G145900.2	Wheat	cytosol	72.17	70.68
TraesCS4D01G337200.1	Wheat	cytosol	71.21	69.87
TraesCS5A01G510600.1	Wheat	cytosol	70.63	69.3
CDY18239	Canola	endoplasmic reticulum, plastid	72.17	68.24
CDY15510	Canola	plastid	71.59	67.82
HORVU4Hr1G083960.3	Barley	plastid	71.02	63.14
CDY19484	Canola	plastid	73.7	63.05
Bra030575.1-P	Field mustard	cytosol	66.79	60.63
CDX86629	Canola	plastid	61.42	60.49
CDY49475	Canola	extracellular	10.17	50.48
CDY29722	Canola	mitochondrion	9.02	29.19

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0000349	GO:GO:0000398
GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	GO:GO:0071006
InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CW92
PFAM:PF00400	PFAM:PF04564	PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698
PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g090660.2	EnsemblPlants:Solyc09g090660.2.1	UniParc:UPI000276AF9A	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:70113114..70121211

Molecular Weight (calculated)

56334.6 Da

IEP (calculated)

6.565

GRAVY (calculated)

-0.236

Length

521 amino acids

Sequence
(BLAST)

001: MNCSISGEVP EDPVVSKKSG LLFEKRLIER HISDYGKCPI TGEPLTADDI IPVKTGKIVK PRPVQAASIP GMLGMFQIEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDEARGLLA QAERQIPMAA TTAVGTTAVS NGKRVAEDED VGPDGKKIRP GISHSVIETL TECNAGLSQQ RKKRQIPATL
201: APVDAVARYT QLNSFPLHKT NKPGILSLDI HYAKDIIATG GVDSNAVVFD RPSGQIISTL SGHSKRVTSV KFAAEGELVV SGSADKTVRV WQSSENGNYD
301: CRHVLKDHTA EVQAVTVHAT NNYFVTASLD STWCFYDLAS GLCLTQVADA SESEGYTSAA FHPDGLILGT GTSGSLVKIW DVKSQANVAK FDGHVGSVTA
401: ISFSENGYFL ATAAHDGVKL WDLRKLKNFK TFAPYDDNTP TQSVEFDHSG SYLALGGSDI RVYQVASVKA EWNSIKTFPD LSGTGKATCL KFGPDAAYIA
501: VGSMDRNLRI FGLPGEDQME D

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.