CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93482
CDX94951
CDY20673
CDY31065
CDY47227
CDY53058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	CDX93482	AT1G09770.1	19629177
AT1G04510.1	CDX94951	AT1G09770.1	19629177
AT1G04510.1	CDY20673	AT1G09770.1	19629177
AT1G04510.1	CDY31065	AT1G09770.1	19629177
AT1G04510.1	CDY47227	AT1G09770.1	19629177
AT1G04510.1	CDY53058	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89818	Canola	cytosol	79.58	80.65
CDY15510	Canola	plastid	81.1	78.0
AT1G04510.1	Thale cress	cytosol	75.99	76.86
CDY18239	Canola	endoplasmic reticulum, plastid	79.96	76.77
CDY23752	Canola	cytosol	71.46	72.0
CDY37731	Canola	cytosol	71.08	71.62
CDY17165	Canola	cytosol	70.51	71.05
VIT_05s0049g01840.t01	Wine grape	cytosol	62.19	62.79
CDY19484	Canola	plastid	71.27	61.9
PGSC0003DMT400044280	Potato	cytosol	60.87	61.8
Solyc09g090660.2.1	Tomato	cytosol, nucleus	60.49	61.42
PGSC0003DMT400075431	Potato	cytosol	52.36	61.42
KRG90340	Soybean	nucleus	60.87	61.33
KRH33584	Soybean	nucleus	60.49	60.95
TraesCS1B01G165900.2	Wheat	cytosol	59.92	60.15
KXG38386	Sorghum	cytosol	59.74	60.08
HORVU1Hr1G039050.13	Barley	cytosol	59.74	59.85
TraesCS1A01G148000.1	Wheat	cytosol	59.92	59.59
Os10t0466300-01	Rice	nucleus	59.36	59.58
GSMUA_Achr11P...	Banana	cytosol	59.17	59.51
TraesCS1D01G145900.2	Wheat	cytosol	59.74	59.4
GSMUA_Achr8P12630_001	Banana	cytosol	58.6	58.94
TraesCS4B01G341300.1	Wheat	cytosol	58.03	58.48
TraesCS4D01G337200.1	Wheat	cytosol	58.03	57.82
TraesCS5A01G510600.1	Wheat	cytosol	57.84	57.63
CDY49475	Canola	extracellular	11.15	56.19
HORVU4Hr1G083960.3	Barley	plastid	57.84	52.22
CDY29722	Canola	mitochondrion	7.75	25.47

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	EnsemblPlants:CDX86629	ProteinID:CDX86629	ProteinID:CDX86629.1	ncoils:Coil
GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00145288001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF08606	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320	SUPFAM:SSF50978	UniPathway:UPA00143
UniParc:UPI0004EE044D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaC08g00740D

Coordinates

chrLK031846:-:1211474..1217261

Molecular Weight (calculated)

58408.4 Da

IEP (calculated)

8.538

GRAVY (calculated)

-0.246

Length

529 amino acids

Sequence
(BLAST)

001: MLFIMIKYHF WHIIIKKIFQ TVGNYPAKFR WSLWFRRRRV CSTRSGLSKG IYRIMGNVQL LVNHTPLMTL PDSLLGTVLP IVKPKPLHTA TIPGLLGAFQ
101: SEWDGLMLTN FSLEQQLHTA RQELSHALYQ HDAACRVISR LKKERDEARQ LLSEAERQLP AAPEVAPANA TLSNGKRAAD GAEQGPDAKK MRLGISTEVI
201: TELTDCNASL SQQRKKRQVD ILHSKDVIAT GGIDTTAVLF DRPSGQILST LTGHSKKVTS IKFVGDTDLV LTASSDKTVR IWGSSEDGNY ACIHTLKDHS
301: AEVRAVTVHA TNKYFVSASL DSTWCFYDMT SGLCLAQVAD DSEKVDYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHTGEIT SVSFSENGYF
401: LATSALDGVR LWDLRKLKNF RTFEFPDANS VEFDHSGSYL GIAASDIRRV DRTNDNTYAF QRFRVFQTAS VKAEWNPVKT LPDLSGTGKA TCVKFGPDAK
501: YVAVGSMDRN LRICGLPSDD STEDSAQDS

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.