CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92639
KRH34143

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	KRG92639	AT1G09770.1	19629177
AT1G04510.1	KRH34143	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90340	Soybean	nucleus	98.29	98.29
VIT_05s0049g01840.t01	Wine grape	cytosol	84.38	84.54
PGSC0003DMT400044280	Potato	cytosol	80.95	81.57
Solyc09g090660.2.1	Tomato	cytosol, nucleus	80.57	81.19
PGSC0003DMT400075431	Potato	cytosol	64.38	74.94
Zm00001d021987_P001	Maize	cytosol	8.19	74.14
GSMUA_Achr11P...	Banana	cytosol	74.1	73.95
GSMUA_Achr8P12630_001	Banana	cytosol	73.9	73.76
CDY37731	Canola	cytosol	73.71	73.71
AT1G04510.1	Thale cress	cytosol	73.33	73.61
CDY17165	Canola	cytosol	73.52	73.52
Bra005504.1-P	Field mustard	cytosol	73.52	73.52
CDY23752	Canola	cytosol	73.52	73.52
AT2G33340.1	Thale cress	cytosol	73.14	73.14
Os10t0466300-01	Rice	nucleus	72.95	72.68
KXG38386	Sorghum	cytosol	72.76	72.62
Bra021844.1-P	Field mustard	nucleus	60.76	72.17
CDX89818	Canola	cytosol	71.43	71.84
Bra015322.1-P	Field mustard	cytosol	71.43	71.84
TraesCS1B01G165900.2	Wheat	cytosol	72.0	71.73
TraesCS1A01G148000.1	Wheat	cytosol	72.0	71.05
HORVU1Hr1G039050.13	Barley	cytosol	71.43	71.02
TraesCS1D01G145900.2	Wheat	cytosol	71.81	70.86
TraesCS4B01G341300.1	Wheat	cytosol	70.29	70.29
TraesCS5A01G510600.1	Wheat	cytosol	70.48	69.68
TraesCS4D01G337200.1	Wheat	cytosol	70.48	69.68
CDY15510	Canola	plastid	71.05	67.82
CDY18239	Canola	endoplasmic reticulum, plastid	71.05	67.7
CDY19484	Canola	plastid	73.71	63.55
HORVU4Hr1G083960.3	Barley	plastid	70.1	62.8
CDX86629	Canola	plastid	60.95	60.49
Bra030575.1-P	Field mustard	cytosol	65.9	60.28
CDY49475	Canola	extracellular	9.52	47.62
CDY29722	Canola	mitochondrion	8.38	27.33

Protein Annotations

EntrezGene:100800213	MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	EMBL:ACUP02006534	ncoils:Coil
EnsemblPlantsGene:GLYMA_10G133700	GO:GO:0000118	GO:GO:0000349	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674
GO:GO:0003714	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006357	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016567	GO:GO:0016575	GO:GO:0016740
GO:GO:0019538	GO:GO:0061630	GO:GO:0071006	GO:GO:1903507	UniProt:I1LAQ3	InterPro:IPR001680
InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH33584	ProteinID:KRH33584
ProteinID:KRH33584.1	PFAM:PF00400	PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698
PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978
SUPFAM:SSF57850	UniParc:UPI000233C63B	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:35863186..35884173

Molecular Weight (calculated)

57058.1 Da

IEP (calculated)

6.456

GRAVY (calculated)

-0.296

Length

525 amino acids

Sequence
(BLAST)

001: MNCSISGEVP EDPVVSRNSG LLFEKRLIER HISDYGKCPI TGEPLTMDDI VPIKTGKIVK PRPVQAASIP GMLGMFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDEARSVLA QAERQFPASA PNAITANDPV LSNGKRAAED EDLAPGAKKI HPGISSSIIS ELTDCNASLS QQRKKRQIPA
201: TLAPVEALEA YTQISSHPFH KTNKQGIISL DILYSKDLIA TGGIDTNAVI FDRPSGQILA TLSGHSKKVT SVKFVAQGES FLTASADKTV RLWQGSDDGN
301: YNCRHILKDH TAEVQAVTVH ATNNYFVTAS LDGSWCFYEL SSGTCLTQVY DTSGSSEGYT SAAFHPDGLI LGTGTTESLV KIWDVKSQAN VARFDGHAGP
401: VTAISFSENG YFLATAAHDG VKLWDLRKLK NFRNFAPYDS ETPTSSVEFD HSGSYLAVAG SDIRIYQVAN VKSEWNCIKT FPDLSGTGKN TCVKFGSDSK
501: YIAVGSMDRN LRIFGLPGED APTES

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.