Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021844.1-P | Field mustard | nucleus | 79.62 | 94.57 |
| CDY23752 | Canola | cytosol | 94.29 | 94.29 |
| CDY37731 | Canola | cytosol | 93.9 | 93.9 |
| Bra005504.1-P | Field mustard | cytosol | 92.76 | 92.76 |
| CDY17165 | Canola | cytosol | 92.76 | 92.76 |
| AT1G04510.1 | Thale cress | cytosol | 83.05 | 83.37 |
| CDY19484 | Canola | plastid | 92.38 | 79.64 |
| VIT_05s0049g01840.t01 | Wine grape | cytosol | 76.19 | 76.34 |
| KRG90340 | Soybean | nucleus | 73.71 | 73.71 |
| KRH33584 | Soybean | nucleus | 73.14 | 73.14 |
| PGSC0003DMT400044280 | Potato | cytosol | 72.38 | 72.94 |
| Solyc09g090660.2.1 | Tomato | cytosol, nucleus | 72.19 | 72.74 |
| GSMUA_Achr11P... | Banana | cytosol | 71.81 | 71.67 |
| KXG38386 | Sorghum | cytosol | 70.86 | 70.72 |
| GSMUA_Achr8P12630_001 | Banana | cytosol | 70.67 | 70.53 |
| TraesCS1B01G165900.2 | Wheat | cytosol | 70.48 | 70.21 |
| PGSC0003DMT400075431 | Potato | cytosol | 60.19 | 70.07 |
| Os10t0466300-01 | Rice | nucleus | 70.29 | 70.02 |
| HORVU1Hr1G039050.13 | Barley | cytosol | 70.1 | 69.7 |
| TraesCS1A01G148000.1 | Wheat | cytosol | 70.48 | 69.55 |
| TraesCS1D01G145900.2 | Wheat | cytosol | 70.29 | 69.36 |
| Zm00001d021987_P001 | Maize | cytosol | 7.62 | 68.97 |
| TraesCS4B01G341300.1 | Wheat | cytosol | 68.19 | 68.19 |
| TraesCS4D01G337200.1 | Wheat | cytosol | 68.38 | 67.61 |
| TraesCS5A01G510600.1 | Wheat | cytosol | 68.19 | 67.42 |
| HORVU4Hr1G083960.3 | Barley | plastid | 68.76 | 61.6 |
Protein Annotations
| MapMan:16.4.5.1.4 | Gene3D:2.130.10.10 | Gene3D:3.30.40.10 | EntrezGene:817897 | ProteinID:AAB80652.1 | ProteinID:AEC08817.1 |
| ProteinID:AEC08818.1 | ArrayExpress:AT2G33340 | EnsemblPlantsGene:AT2G33340 | RefSeq:AT2G33340 | TAIR:AT2G33340 | RefSeq:AT2G33340-TAIR-G |
| EnsemblPlants:AT2G33340.1 | TAIR:AT2G33340.1 | EMBL:AY080868 | Unigene:At.44022 | ncoils:Coil | EMBL:FJ820118 |
| GO:GO:0000349 | GO:GO:0000398 | GO:GO:0000974 | GO:GO:0002376 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006281 | GO:GO:0006397 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0006974 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0030312 | GO:GO:0042742 | GO:GO:0045087 | GO:GO:0061630 | GO:GO:0070534 | GO:GO:0071006 |
| GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR003613 | InterPro:IPR013083 | InterPro:IPR015943 | InterPro:IPR017986 |
| Symbol:MAC3B | RefSeq:NP_850206.4 | RefSeq:NP_850207.4 | UniProt:O22785 | PFAM:PF00400 | PFAM:PF08606 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50082 | PFscan:PS50294 | PFscan:PS51698 | PANTHER:PTHR43995 | InterPro:Pre-mRNA_splic_Prp19 |
| InterPro:Prp19 | SMART:SM00320 | SMART:SM00504 | SUPFAM:SSF50978 | SUPFAM:SSF57850 | UniParc:UPI000052D39A |
| InterPro:Ubox_domain | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
Coordinates
chr2:-:14126141..14131224
Molecular Weight (calculated)
56730.9 Da
IEP (calculated)
6.032
GRAVY (calculated)
-0.234
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.