Factsheet for PGSC0003DMT400044280

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029953

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	PGSC0003DMT400029953	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090660.2.1	Tomato	cytosol, nucleus	97.89	97.89
PGSC0003DMT400075431	Potato	cytosol	73.7	85.14
VIT_05s0049g01840.t01	Wine grape	cytosol	84.26	83.78
KRG90340	Soybean	nucleus	81.77	81.14
KRH33584	Soybean	nucleus	81.57	80.95
Zm00001d021987_P001	Maize	cytosol	8.64	77.59
GSMUA_Achr8P12630_001	Banana	cytosol	76.01	75.29
GSMUA_Achr11P...	Banana	cytosol	75.82	75.1
CDY17165	Canola	cytosol	74.86	74.29
Bra005504.1-P	Field mustard	cytosol	74.86	74.29
AT1G04510.1	Thale cress	cytosol	73.9	73.61
CDY23752	Canola	cytosol	74.09	73.52
CDY37731	Canola	cytosol	74.09	73.52
CDX89818	Canola	cytosol	73.13	72.99
Bra015322.1-P	Field mustard	cytosol	73.13	72.99
KXG38386	Sorghum	cytosol	73.51	72.81
Os10t0466300-01	Rice	nucleus	73.32	72.49
Bra021844.1-P	Field mustard	nucleus	61.42	72.4
AT2G33340.1	Thale cress	cytosol	72.94	72.38
TraesCS1B01G165900.2	Wheat	cytosol	72.55	71.73
TraesCS1A01G148000.1	Wheat	cytosol	72.55	71.05
HORVU1Hr1G039050.13	Barley	cytosol	71.98	71.02
TraesCS1D01G145900.2	Wheat	cytosol	72.36	70.86
TraesCS4B01G341300.1	Wheat	cytosol	71.21	70.67
TraesCS4D01G337200.1	Wheat	cytosol	71.02	69.68
TraesCS5A01G510600.1	Wheat	cytosol	70.44	69.11
CDY18239	Canola	endoplasmic reticulum, plastid	72.74	68.78
CDY15510	Canola	plastid	72.17	68.36
CDY19484	Canola	plastid	74.66	63.88
HORVU4Hr1G083960.3	Barley	plastid	70.83	62.97
Bra030575.1-P	Field mustard	cytosol	67.37	61.15
CDX86629	Canola	plastid	61.8	60.87
CDY49475	Canola	extracellular	10.36	51.43
CDY29722	Canola	mitochondrion	9.4	30.43

Protein Annotations

EntrezGene:102600710	MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0000398
GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0061630	InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986
UniProt:M1BFY0	PFAM:PF00400	PFAM:PF04564	PFAM:PF08606	EnsemblPlantsGene:PGSC0003DMG400017196	PGSC:PGSC0003DMG400017196
EnsemblPlants:PGSC0003DMT400044280	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19
InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI0002948BC2
InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006354435.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Pre-mRNA-splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400017196]

Coordinates

chr9:+:56966936..56975504

Molecular Weight (calculated)

56342.6 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.250

Length

521 amino acids

Sequence
(BLAST)

001: MNCSISGEVP EDPVVSKKSG LLFEKRLIER HISDYGKCPI TGEPLTADDI IPVKTGKIVK PRPVQAASIP GMLGMFQIEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDEARGLLA QAERQIPMAA TTAVGTTAVS NGKRAAEDED TGPDGKKIRP GISHSVIETL TECNAGLSQQ RKKRQIPATL
201: APVDALARYT QLNSFPLHKT NKPGILSLDI HYAKDIIATG GVDSNAVIFD RPSGQIISTL SGHSKRVTSV KFAAEGELVV SGSADKTVRV WQSSENGNYD
301: CRHVLKDHTA EVQAVTVHAT NNYFVTASLD STWCFYDLAS GLCLAQVADA SESEGYTSAA FHPDGLILGT GTSGSLVKIW DVKSQANVAK FDGHVGSVTA
401: ISFSENGYFL ATAAHDGVKL WDLRKLKNFR TFAPYDENTP TQSVEFDHSG SYLALGGSDI RVYQVASVKA DWNHIKTFPD LSGTGKATCL KFGPDASYIA
501: VGSMDRNLRI FGLPGEDQME G

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.