CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49475	Canola	extracellular	29.19	44.76
PGSC0003DMT400075431	Potato	cytosol	27.33	9.76
PGSC0003DMT400044280	Potato	cytosol	30.43	9.4
Solyc09g090660.2.1	Tomato	cytosol, nucleus	29.19	9.02
VIT_05s0049g01840.t01	Wine grape	cytosol	28.57	8.78
KRG90340	Soybean	nucleus	28.57	8.76
TraesCS4B01G341300.1	Wheat	cytosol	27.95	8.57
CDY23752	Canola	cytosol	27.95	8.57
CDY37731	Canola	cytosol	27.95	8.57
TraesCS4D01G337200.1	Wheat	cytosol	27.95	8.47
CDX89818	Canola	cytosol	27.33	8.43
KRH33584	Soybean	nucleus	27.33	8.38
CDY17165	Canola	cytosol	27.33	8.38
TraesCS5A01G510600.1	Wheat	cytosol	26.71	8.1
CDY15510	Canola	plastid	27.33	8.0
GSMUA_Achr8P12630_001	Banana	cytosol	26.09	7.98
CDY18239	Canola	endoplasmic reticulum, plastid	26.71	7.8
KXG38386	Sorghum	cytosol	25.47	7.79
GSMUA_Achr11P...	Banana	cytosol	25.47	7.79
CDX86629	Canola	plastid	25.47	7.75
Os10t0466300-01	Rice	nucleus	24.22	7.4
TraesCS1B01G165900.2	Wheat	cytosol	24.22	7.4
HORVU4Hr1G083960.3	Barley	plastid	26.71	7.34
TraesCS1A01G148000.1	Wheat	cytosol	24.22	7.33
TraesCS1D01G145900.2	Wheat	cytosol	24.22	7.33
CDY19484	Canola	plastid	27.33	7.22
HORVU1Hr1G039050.13	Barley	cytosol	22.98	7.01
Zm00001d021987_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY29722	EnsemblPlantsGene:GSBRNA2T00043532001	ProteinID:CDY29722	ProteinID:CDY29722.1	SEG:seg	UniParc:UPI0004EDD76F
UniProt:A0A078GX01	MapMan:35.2	:	:	:	:

Description

BnaAnng03440DBnaAnng03440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GX01]

Coordinates

chrLK032242:+:177386..178667

Molecular Weight (calculated)

18535.7 Da

IEP (calculated)

10.194

GRAVY (calculated)

-0.245

Length

161 amino acids

Sequence
(BLAST)

001: MRYKQIYRKP ISNLINYKFA FIKVTTKKKL EKKKRVYRVS LTSHGVDETG GEAISDRESP SSLSHSCNIY SDAVVVNFGT SSPSRHRPCR VSPRCELSLS
101: MQRINTLCLH RFDSAWCFYD MSSGLCFAQI RKKMGLFLLM FHLLGLMEKG SSTVCIFKWE T

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.