Factsheet for TraesCS4D01G337200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G307100.1
TraesCS5A01G450800.1
TraesCS5B01G307500.2
TraesCS5B01G459200.1
TraesCS5D01G314000.1
TraesCS5D01G460800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	TraesCS5A01G307100.1	AT1G09770.1	19629177
AT1G04510.1	TraesCS5A01G450800.1	AT1G09770.1	19629177
AT1G04510.1	TraesCS5B01G307500.2	AT1G09770.1	19629177
AT1G04510.1	TraesCS5B01G459200.1	AT1G09770.1	19629177
AT1G04510.1	TraesCS5D01G314000.1	AT1G09770.1	19629177
AT1G04510.1	TraesCS5D01G460800.1	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G510600.1	Wheat	cytosol	98.68	98.68
TraesCS4B01G341300.1	Wheat	cytosol	96.61	97.71
HORVU4Hr1G083960.3	Barley	plastid	92.66	83.96
Os10t0466300-01	Rice	nucleus	82.3	82.92
TraesCS1D01G145900.2	Wheat	cytosol	82.3	82.14
GSMUA_Achr8P12630_001	Banana	cytosol	78.53	79.28
GSMUA_Achr11P...	Banana	cytosol	77.97	78.71
VIT_05s0049g01840.t01	Wine grape	cytosol	71.56	72.52
Solyc09g090660.2.1	Tomato	cytosol, nucleus	69.87	71.21
PGSC0003DMT400044280	Potato	cytosol	69.68	71.02
KRG90340	Soybean	nucleus	70.06	70.86
KRH33584	Soybean	nucleus	69.68	70.48
AT1G04510.1	Thale cress	cytosol	67.61	68.64
Bra015322.1-P	Field mustard	cytosol	67.23	68.39
CDX89818	Canola	cytosol	67.23	68.39
CDY37731	Canola	cytosol	67.61	68.38
CDY23752	Canola	cytosol	67.61	68.38
CDY17165	Canola	cytosol	67.61	68.38
Bra005504.1-P	Field mustard	cytosol	67.61	68.38
AT2G33340.1	Thale cress	cytosol	67.61	68.38
Bra021844.1-P	Field mustard	nucleus	56.69	68.1
PGSC0003DMT400075431	Potato	cytosol	57.63	67.85
CDY15510	Canola	plastid	67.23	64.91
CDY18239	Canola	endoplasmic reticulum, plastid	66.86	64.43
CDY19484	Canola	plastid	67.42	58.78
CDX86629	Canola	plastid	57.82	58.03
Bra030575.1-P	Field mustard	cytosol	62.15	57.49
CDY49475	Canola	extracellular	8.66	43.81
CDY29722	Canola	mitochondrion	8.47	27.95

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0000398	GO:GO:0000974
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630
InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19
InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4D01G337200
EnsemblPlants:TraesCS4D01G337200.1	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:Znf_RING/FYVE/PHD	TIGR:cd00200	TIGR:cd16656	:	:	:

Description

No Description!

Coordinates

chr4D:+:494822544..494828227

Molecular Weight (calculated)

57863.6 Da

IEP (calculated)

6.460

GRAVY (calculated)

-0.301

Length

531 amino acids

Sequence
(BLAST)

001: MICAISGEVP EDPVLSTKSG LLFERRLIQR YIEDHGKCPV TKEELAMDDL VTVKTNKIPK PRPLQAASVP GLLGMFQNEW DALMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRTLLA QAERQIPISA AGPAPVAAVT NGKRALEDEV GPDGKKIRPG INPVIIDELT ECNSVLSAQR KKRQVPPSLA
201: PIDALERYTQ ISSHPLHKTN KPGILSIDIH HSKDIIATGG IDTNAVLFDR PSGQVLCTLT DHSKKITSLK FVPRDELLIT GSADKTARVW QGNEDGSYGC
301: RHTMRDHGAE VEAVTVHASQ KYFATASRDS TWCFYDISTG SCLTQVGEAS GQDGYTSAAF HPDGLILGTG TSEGVIKIWD VKSQARVAKF EGEVGHVGTV
401: TAMSFSENGY FLATAALDGV KLWDLRKLRN FRTLSPYDPD TPTSSVEFDF SGSYIAVAGS DIRVYQVANV KTEWNLVKTL PDLSGTGKVT SVKFGADAKY
501: VAVGSMDHNL RVFGLPGDEQ MEEAKSESAA Q

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.