Factsheet for TraesCS5D01G460800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G148000.1
TraesCS1B01G165900.2
TraesCS1D01G145900.2
TraesCS3A01G175600.2
TraesCS3A01G181200.1
TraesCS3B01G205300.1
TraesCS3B01G211300.1
TraesCS3D01G181100.1
TraesCS3D01G186100.1
TraesCS4B01G341300.1
TraesCS4D01G337200.1
TraesCS5A01G510600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	TraesCS1A01G148000.1	AT1G04510.1	19629177
AT1G09770.1	TraesCS1B01G165900.2	AT1G04510.1	19629177
AT1G09770.1	TraesCS1D01G145900.2	AT1G04510.1	19629177
AT1G09770.1	TraesCS4B01G341300.1	AT1G04510.1	19629177
AT1G09770.1	TraesCS4D01G337200.1	AT1G04510.1	19629177
AT1G09770.1	TraesCS5A01G510600.1	AT1G04510.1	19629177
AT1G09770.1	TraesCS3A01G181200.1	AT3G18165.1	17575050
AT1G09770.1	TraesCS3B01G211300.1	AT3G18165.1	17575050
AT1G09770.1	TraesCS3D01G186100.1	AT3G18165.1	17575050
AT1G09770.1	TraesCS3A01G175600.2	AT4G15900.1	17575050
AT1G09770.1	TraesCS3B01G205300.1	AT4G15900.1	17575050
AT1G09770.1	TraesCS3D01G181100.1	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G459200.1	Wheat	nucleus	97.33	96.38
TraesCS5A01G450800.1	Wheat	nucleus	95.46	94.25
HORVU5Hr1G108630.3	Barley	nucleus	92.99	89.04
TraesCS5D01G314000.1	Wheat	nucleus	92.5	88.48
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	76.6	83.89
EES15997	Sorghum	nucleus	81.24	83.47
KXG34025	Sorghum	nucleus	80.85	83.32
Os04t0348300-01	Rice	nucleus	79.37	82.72
CDY47227	Canola	nucleus	18.85	80.93
Bra027160.1-P	Field mustard	nucleus	18.56	79.66
CDY53058	Canola	nucleus	18.46	79.24
CDY31065	Canola	nucleus	58.54	70.01
AT1G09770.1	Thale cress	nucleus	58.24	69.91
Bra030798.1-P	Field mustard	nucleus	58.24	69.66
Bra019993.1-P	Field mustard	nucleus	57.95	69.55
CDX94951	Canola	nucleus	57.95	69.47
CDY20673	Canola	nucleus	58.05	69.42
CDX93482	Canola	nucleus	57.75	69.23
KRH34143	Soybean	nucleus	62.29	65.59
KRG92639	Soybean	nucleus	61.8	65.01
GSMUA_Achr9P23340_001	Banana	nucleus	69.89	62.82
Solyc04g009950.2.1	Tomato	nucleus	60.61	62.21
PGSC0003DMT400029953	Potato	nucleus	60.41	62.07
VIT_14s0036g00510.t01	Wine grape	nucleus	60.32	61.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	InterPro:Cdc5p/Cef1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	PFAM:PF11831	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF559
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS5D01G460800	EnsemblPlants:TraesCS5D01G460800.1	TIGR:cd00167
TIGR:cd11659	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:505202052..505207137

Molecular Weight (calculated)

113395.0 Da

IEP (calculated)

4.796

GRAVY (calculated)

-0.935

Length

1013 amino acids

Sequence
(BLAST)

0001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE
0101: KLLDAACAKD ENYEPNDDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDNRHK
0201: KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT TIEELEGRRR VDVEAQLRKQ DIAKNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP
0301: QISDIELEEI AKMGNAGDPA LAEELGEGST ATRTLLANYS QTPRLGMTPL RTPQRMPGGK GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR
0401: KKEMQTPNPM ATPLASPGPG VTPRIGMTPS RDGNSFGLTP KGTPFRDELH INEEVEMQDS AQLELRRQAE LRKGLRSGFA SIPQPKNEYQ IVMPPITEEN
0501: EESEEKIEED MSDRLARERA EEQARQEALL RKRSKVLQRS LPRPPAASVE ILRQSLIKGG ESRSTFVPPT SLEQADELIN EELLRLLEHD NAKYPLDGQI
0601: QREKKKGSKR QANAAPFIPE IEGFDEHELK EASSMVEEEI QYLRVAMGHE NESFEDFVKS HDACQEDLMF FPTNNSYGLA SVAGNADKIS ALQHEFEMVK
0701: KRMDDEAKKA SRLEQKIKLL TQGYQARAAK LGSQIQDTFK QMNTAATELE CFEELQKQEQ MAGAYRVRNL AEEVNKQKAL EQTLQSRYGD LLSGYQSIQG
0801: QLEEHKRLLN LQKEAIEAEN RAKEEEAAAQ NRAKEEEAAA QNRAKEEEAA AQDRAKEEEA AAQDRAAEEE NERKNRGIEE ESGQTRVANE EAAGSKEIIG
0901: DQMDVDNADA AGELVGPIPP LTDAQVDNDG ASVEQSTSNA QSGDSVTMNE GAIDKVDSSK LDGQDNTNGS MDVDAGSQEE GNNVPAATVV DVGNTPVSSD
1001: QAVSNEESDV VPE

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.