Factsheet for Os04t0348300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0339100-01
Os10t0466300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	Os10t0466300-01	AT1G04510.1	19629177
AT1G09770.1	Os03t0339100-01	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	80.45	84.54
KXG34025	Sorghum	nucleus	84.16	83.21
EES15997	Sorghum	nucleus	83.95	82.76
CDY47227	Canola	nucleus	19.65	80.93
Bra027160.1-P	Field mustard	nucleus	19.44	80.08
CDY53058	Canola	nucleus	19.34	79.66
TraesCS5D01G460800.1	Wheat	nucleus	82.72	79.37
TraesCS5B01G459200.1	Wheat	nucleus	83.02	78.89
TraesCS5A01G450800.1	Wheat	nucleus	82.61	78.27
HORVU5Hr1G108630.3	Barley	nucleus	83.13	76.37
TraesCS5D01G314000.1	Wheat	nucleus	82.72	75.92
HORVU5Hr1G080010.3	Barley	nucleus	82.3	74.77
TraesCS5A01G307100.1	Wheat	nucleus	83.02	74.65
TraesCS5B01G307500.2	Wheat	nucleus	82.41	73.89
AT1G09770.1	Thale cress	nucleus	61.63	70.97
CDY31065	Canola	nucleus	61.32	70.37
Bra019993.1-P	Field mustard	nucleus	61.01	70.26
Bra030798.1-P	Field mustard	nucleus	61.11	70.13
CDX94951	Canola	nucleus	60.8	69.94
CDX93482	Canola	nucleus	60.8	69.94
CDY20673	Canola	nucleus	60.7	69.66
KRH34143	Soybean	nucleus	65.74	66.42
KRG92639	Soybean	nucleus	65.23	65.84
Solyc04g009950.2.1	Tomato	nucleus	64.4	63.42
PGSC0003DMT400029953	Potato	nucleus	63.58	62.68
GSMUA_Achr9P23340_001	Banana	nucleus	71.91	62.02
VIT_14s0036g00510.t01	Wine grape	nucleus	62.96	61.94

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	EntrezGene:4335542	UniProt:A0A0P0W9C3
ProteinID:BAS88706.1	InterPro:Cdc5p/Cef1	ncoils:Coil	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006357	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009870	GO:GO:0009987	GO:GO:0010204
GO:GO:0030154	GO:GO:0042742	GO:GO:0043565	GO:GO:0044212	GO:GO:0050832	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os04g0348300	EnsemblPlants:Os04t0348300-01	PFAM:PF11831	PFAM:PF13921
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF559	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000393BB34	RefSeq:XP_015636290.1	SEG:seg	:	:	:

Description

Similar to OSIGBa0130K07.8 protein. (Os04t0348300-01);Similar to OSIGBa0130K07.8 protein. (Os04t0348300-02)

Coordinates

chr4:+:16579948..16587160

Molecular Weight (calculated)

109690.0 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.983

Length

972 amino acids

Sequence
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACAKD ENYEPNDDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDTRQR
201: KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT TIEELEGKRR VDIEAQLRKQ DIARNKILQR QDAPAAIMQA NRLNDPEAVT KRSKLMLPPP
301: QISDHELEEI AKMGNAGDPS LVEELGEGST ATRALLSSYS QTPRLGMTPL RTPQRTPAGK GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR
401: KKEMQTPNPM ATPLASPGPG ATPRIGMTPS RDGSSFGLTP KSTPFRDELR INEEVDMQDT AKLELRRQAE LRKSLRSGFA SIPQPKNEYQ IVMPPITEEE
501: KEEAEEKIED MSDRLARERA EEQARQEALL RKRSKVLQRS LPRPPAASIE ILRQTLIKGG ESRSRSTFVP PTSLEQADEL INEELLRLLE HDNAKYPLDE
601: KTQKDKKKGS KRQANGTPSV PEIEDFDEDE LKEANSMLEE EVQYLRVAMG HESESLEDFV KAHDACQEDL MFFPNNNSYG LASVAGNSDK IAALQYEFEI
701: VKKRMDDEAK KASRLEQKIK LLTQGYQVRA GKLWSQVQDT FKQMDTSATE LECFQELQKQ EQMAASYRIR NLTEEVNKQK ALERTLQSRY GDLLTSYKRI
801: QEQLEEHKRQ LMIQEEMEAQ KRAQEEEEME AQKRTQAEEE KEAAKAEEEA RKMDRAADEE AAGSKQVNED QMDVDNSNAD GDEFVGPIPP GPGTQGDDNV
901: VAVEENSSSQ SGDTATTEDG SCGMIDASKS GGQDHIDSKD ELPTVGASLD DGSAAASSDQ DVSTEVNATV PE

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.