Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G039050.13 | |
| HORVU3Hr1G035450.7 | |
| HORVU3Hr1G037080.1 | |
| HORVU4Hr1G083960.3 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G314000.1 | Wheat | nucleus | 92.9 | 93.86 |
| TraesCS5B01G307500.2 | Wheat | nucleus | 93.64 | 92.44 |
| TraesCS5A01G307100.1 | Wheat | nucleus | 91.22 | 90.29 |
| HORVU5Hr1G108630.3 | Barley | nucleus | 86.54 | 87.52 |
| Zm00001d042287_P001 | Maize | extracellular, nucleus, plasma membrane | 73.18 | 84.65 |
| EES15997 | Sorghum | nucleus | 77.48 | 84.08 |
| KXG34025 | Sorghum | nucleus | 76.92 | 83.72 |
| Os04t0348300-01 | Rice | nucleus | 74.77 | 82.3 |
| CDY47227 | Canola | nucleus | 17.85 | 80.93 |
| Bra027160.1-P | Field mustard | nucleus | 17.57 | 79.66 |
| CDY53058 | Canola | nucleus | 17.48 | 79.24 |
| CDY31065 | Canola | nucleus | 55.79 | 70.48 |
| AT1G09770.1 | Thale cress | nucleus | 55.42 | 70.26 |
| Bra030798.1-P | Field mustard | nucleus | 55.61 | 70.25 |
| Bra019993.1-P | Field mustard | nucleus | 55.23 | 70.02 |
| CDX93482 | Canola | nucleus | 55.23 | 69.94 |
| CDX94951 | Canola | nucleus | 55.14 | 69.82 |
| CDY20673 | Canola | nucleus | 55.23 | 69.78 |
| KRH34143 | Soybean | nucleus | 58.97 | 65.59 |
| KRG92639 | Soybean | nucleus | 58.69 | 65.21 |
| GSMUA_Achr9P23340_001 | Banana | nucleus | 65.98 | 62.64 |
| Solyc04g009950.2.1 | Tomato | nucleus | 57.1 | 61.9 |
| PGSC0003DMT400029953 | Potato | nucleus | 56.82 | 61.66 |
| VIT_14s0036g00510.t01 | Wine grape | nucleus | 56.92 | 61.64 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | MapMan:15.5.2.2 | MapMan:16.4.5.1.2 | UniProt:A0A287RYT1 | InterPro:Cdc5p/Cef1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:HORVU5Hr1G080010 |
| EnsemblPlants:HORVU5Hr1G080010.3 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF11831 | PFAM:PF13921 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF559 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000B48743D | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:558772729..558907636
Molecular Weight (calculated)
119351.0 Da
IEP (calculated)
4.771
GRAVY (calculated)
-0.935
Length
1070 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE
0101: KLLDAACAKD ENYEPNDDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDNRHK
0201: KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT TIEELEGRRR VDVEAQLRKQ DIAKNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP
0301: QISDHELEEI AKMGNAGDPA LAEELGEGST ATRTLLANYS QTPRLGMTPL RTPQRTPGGK GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR
0401: KKEIQTPNPM ATPLASPGPG VTPRIGLTPS RDGNAFGLTP KGTPFRDELH INEEVEMQDS AQLELRRQAE LRRGLRSGFA SIPQPKNEYQ IVMPPITEEK
0501: EEAEERIEED MSDRLARERA EEQARQEALL RKRSKVLQRS LPRPPAASVE ILRQSLIKGG ETRSTFVPPT SLEQADELIN EELLRLLEHD NAKYPLDEQT
0601: QREKKKGSKR QANGAAFVPE IEGFDEHELK EASSMVEEEI QYLRVAMGHE NESFEDFVKS HDACQEDLMF FPTNNSYGLA SVAGNADKIS ALQHEFEMVK
0701: KRMDDEAKKA SRLEQKIKLL TQGYQARAAK LGSQIQDTFK QMNTAATELE CFQELQKQEQ MAAAYRVKNL SDEVNKQKAL ERTLQSRYGD LLSGYQSIHE
0801: QLEEHKRLLR LQAETIEAEN RAKEEAIEAE NRAKEEAIEA ENRAKEAAIE AETRAKEEEA AAQNRAAEEE NERKNHDIEE ESGQTNMVTD EEAAGSKEIK
0901: GDQMDMDNAD VDGDLVGPIP PLPDTQVDND GASVGQTTSN AHSGDSVTMN EGAIDKVDSS KLDDQDNTNC SMDVDAGSQE EGGNVPKAAA TSVDVGNTPV
1001: SWDQAVSNEG SDAVHAPASS DQAVSNEGSD AVHAPASSDQ AGSNEGRDAV HAPVSSDQAV SNEESDAVPE
0101: KLLDAACAKD ENYEPNDDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDNRHK
0201: KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT TIEELEGRRR VDVEAQLRKQ DIAKNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP
0301: QISDHELEEI AKMGNAGDPA LAEELGEGST ATRTLLANYS QTPRLGMTPL RTPQRTPGGK GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR
0401: KKEIQTPNPM ATPLASPGPG VTPRIGLTPS RDGNAFGLTP KGTPFRDELH INEEVEMQDS AQLELRRQAE LRRGLRSGFA SIPQPKNEYQ IVMPPITEEK
0501: EEAEERIEED MSDRLARERA EEQARQEALL RKRSKVLQRS LPRPPAASVE ILRQSLIKGG ETRSTFVPPT SLEQADELIN EELLRLLEHD NAKYPLDEQT
0601: QREKKKGSKR QANGAAFVPE IEGFDEHELK EASSMVEEEI QYLRVAMGHE NESFEDFVKS HDACQEDLMF FPTNNSYGLA SVAGNADKIS ALQHEFEMVK
0701: KRMDDEAKKA SRLEQKIKLL TQGYQARAAK LGSQIQDTFK QMNTAATELE CFQELQKQEQ MAAAYRVKNL SDEVNKQKAL ERTLQSRYGD LLSGYQSIHE
0801: QLEEHKRLLR LQAETIEAEN RAKEEAIEAE NRAKEEAIEA ENRAKEAAIE AETRAKEEEA AAQNRAAEEE NERKNHDIEE ESGQTNMVTD EEAAGSKEIK
0901: GDQMDMDNAD VDGDLVGPIP PLPDTQVDND GASVGQTTSN AHSGDSVTMN EGAIDKVDSS KLDDQDNTNC SMDVDAGSQE EGGNVPKAAA TSVDVGNTPV
1001: SWDQAVSNEG SDAVHAPASS DQAVSNEGSD AVHAPASSDQ AGSNEGRDAV HAPVSSDQAV SNEESDAVPE
001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA
Arabidopsis Description
CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.