Factsheet for GSMUA_Achr9P23340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P18370_001
GSMUA_Achr3P18380_001
GSMUA_Achr8P10190_001
GSMUA_Achr8P10200_001
GSMUA_Achr8P10210_001
GSMUA_Achr8P12630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	GSMUA_Achr11P...	AT1G04510.1	19629177
AT1G09770.1	GSMUA_Achr8P12630_001	AT1G04510.1	19629177
AT1G09770.1	GSMUA_Achr3P18370_001	AT3G18165.1	17575050
AT1G09770.1	GSMUA_Achr3P18380_001	AT3G18165.1	17575050
AT1G09770.1	GSMUA_Achr11P...	AT4G15900.1	17575050
AT1G09770.1	GSMUA_Achr8P10190_001	AT4G15900.1	17575050
AT1G09770.1	GSMUA_Achr8P10200_001	AT4G15900.1	17575050
AT1G09770.1	GSMUA_Achr8P10210_001	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47227	Canola	nucleus	16.86	80.51
Bra027160.1-P	Field mustard	nucleus	16.59	79.24
CDY53058	Canola	nucleus	16.5	78.81
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	59.45	72.43
Os04t0348300-01	Rice	nucleus	62.02	71.91
AT1G09770.1	Thale cress	nucleus	53.77	71.8
Bra019993.1-P	Field mustard	nucleus	53.15	70.97
CDX93482	Canola	nucleus	53.15	70.89
CDY31065	Canola	nucleus	53.15	70.72
KXG34025	Sorghum	nucleus	61.67	70.7
Bra030798.1-P	Field mustard	nucleus	52.97	70.48
EES15997	Sorghum	nucleus	61.58	70.39
CDY20673	Canola	nucleus	52.8	70.25
CDX94951	Canola	nucleus	52.62	70.18
TraesCS5D01G460800.1	Wheat	nucleus	62.82	69.89
TraesCS5B01G459200.1	Wheat	nucleus	62.73	69.11
TraesCS5A01G450800.1	Wheat	nucleus	62.47	68.62
KRG92639	Soybean	nucleus	57.14	66.87
TraesCS5D01G314000.1	Wheat	nucleus	62.73	66.76
KRH34143	Soybean	nucleus	56.97	66.74
HORVU5Hr1G108630.3	Barley	nucleus	62.38	66.45
HORVU5Hr1G080010.3	Barley	nucleus	62.64	65.98
VIT_14s0036g00510.t01	Wine grape	nucleus	57.5	65.59
TraesCS5B01G307500.2	Wheat	nucleus	63.0	65.5
TraesCS5A01G307100.1	Wheat	nucleus	62.47	65.12
Solyc04g009950.2.1	Tomato	nucleus	56.97	65.05
PGSC0003DMT400029953	Potato	nucleus	56.61	64.71

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	InterPro:Cdc5p/Cef1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009870	GO:GO:0009987
GO:GO:0010204	GO:GO:0042742	GO:GO:0050832	EnsemblPlantsGene:GSMUA_Achr9G23340_001	EnsemblPlants:GSMUA_Achr9P23340_001	EnsemblPlants:GSMUA_Achr9T23340_001
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0U2U3	InterPro:Myb_dom	PFAM:PF11831	PFAM:PF13921
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF559	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000294A46E	SEG:seg	:	:	:	:

Description

Cell division cycle 5-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G23340_001]

Coordinates

chr9:+:28198983..28206626

Molecular Weight (calculated)

126392.0 Da

IEP (calculated)

4.842

GRAVY (calculated)

-0.752

Length

1127 amino acids

Sequence
(BLAST)

0001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE
0101: KLLDAACAKD ENYEPGDDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDTRHR
0201: KRKRKGIDYN AEIPFEKRPP QGFFDVSGEE RPVEQPKFPT TIEELEGKRR ADIEAQLRKQ DVARNKIAQR QDAPSAILQV NKLNDPEAVR KRSKLMLPAP
0301: QISDQELEEI AKMGYASDLV LANEELDEGS GATHALLANY SQTPRPGITP LRTPQRTPGG KGDAIMMEAE NLARLRESQT PLFGGENPEL HPSDFSGVTP
0401: RKREIQTPNP MATPSATPGP GLTPRIGMTP SRDGYSFGIT PKGTPFRDEL HINEDIEMQD TAKMELHRQA ELKRNLRFGL NNLPQPKNEY QIVIQPIPEE
0501: HEESEEKVEE DMSDRLAREK AQEQARQEAL LRKRSKVLQR ELPRPPTASL EIIKKMLMRG DEDRSSFVPP TPFEQADEMI NRELLVLLEH DNAKYPIDEK
0601: TDEKKKKGTK HLANGKSSAI PELEDLEEDQ LKEADSLIKE EIQFLRVVMG HENESFDDFV KARDACQEDL MFFPARSTYG LASVAGNNEK LAALQNEFEI
0701: VKKRMDDEAK RATRLEQKIK ILTHGYQARA GKLWSQVEAT FKQVDTAATE LECFQVLQKQ ELLAATYRVN SLVEEVTKQK ALEQNLQHRY GDLLAEHDRV
0801: KRLLEEHKMR LRMEEEIAAR NRALEEEAAA RNRALEEEAA AMNRALEEEA AAMNRALEEE AAARNPVPVE EAAEKNVTQE ETAANNHAMN EELADKKDHL
0901: DSDHAEDGTS NEEPIQGEAT HCVGIISNGT DDLKEQMPVA NSVIVSGDVP QLGTEEKMMV DDKMTLNPVD DNMLPIVLVE STGVIPQADS GVLNSDVVGA
1001: SVGMEDATIS DVSNQEVAAS MTQPILSLQN TNEASASDIG SQMAQDDDQQ VGLELVDSGN LVVDGSVSNA DAHVDNVNVN PSVTDHASGG LSSETVMTSS
1101: EISANPAHLF LQSFAVSWFA SLSFIFH

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.