CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00531
KXG25821
KXG38386

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	KXG38386	AT1G04510.1	19629177
AT1G09770.1	EES00531	AT3G18165.1	17575050
AT1G09770.1	KXG25821	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15997	Sorghum	nucleus	93.49	93.2
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	86.16	91.57
Os04t0348300-01	Rice	nucleus	83.21	84.16
CDY47227	Canola	nucleus	19.63	81.78
TraesCS5D01G460800.1	Wheat	nucleus	83.32	80.85
Bra027160.1-P	Field mustard	nucleus	19.33	80.51
TraesCS5B01G459200.1	Wheat	nucleus	83.72	80.45
CDY53058	Canola	nucleus	19.23	80.08
TraesCS5A01G450800.1	Wheat	nucleus	83.21	79.73
TraesCS5D01G314000.1	Wheat	nucleus	84.03	78.0
HORVU5Hr1G108630.3	Barley	nucleus	83.52	77.6
HORVU5Hr1G080010.3	Barley	nucleus	83.72	76.92
TraesCS5A01G307100.1	Wheat	nucleus	83.93	76.32
TraesCS5B01G307500.2	Wheat	nucleus	84.03	76.2
AT1G09770.1	Thale cress	nucleus	60.53	70.5
Bra019993.1-P	Field mustard	nucleus	60.53	70.5
CDY31065	Canola	nucleus	60.53	70.25
CDX94951	Canola	nucleus	60.33	70.18
CDX93482	Canola	nucleus	60.22	70.06
Bra030798.1-P	Field mustard	nucleus	60.33	70.01
CDY20673	Canola	nucleus	60.12	69.78
KRH34143	Soybean	nucleus	64.29	65.7
KRG92639	Soybean	nucleus	63.68	65.01
Solyc04g009950.2.1	Tomato	nucleus	62.97	62.72
PGSC0003DMT400029953	Potato	nucleus	62.87	62.68
GSMUA_Achr9P23340_001	Banana	nucleus	70.7	61.67
VIT_14s0036g00510.t01	Wine grape	nucleus	61.34	61.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	EntrezGene:8079826	UniProt:C5XGY3
InterPro:Cdc5p/Cef1	ncoils:Coil	ProteinID:EES04132.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0008942	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0042128
GO:GO:0043565	GO:GO:0044212	GO:GO:0051537	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KXG34025
ProteinID:KXG34025	ProteinID:KXG34025.2	InterPro:Myb_dom	PFAM:PF11831	PFAM:PF13921	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF559	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3003G409900	SUPFAM:SSF46689
UniParc:UPI0001A855C7	RefSeq:XP_002459012.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:71733025..71739790

Molecular Weight (calculated)

110728.0 Da

IEP (calculated)

4.905

GRAVY (calculated)

-0.977

Length

983 amino acids

Sequence
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACAKD ENYEANDDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDTRHR
201: KRKRKGIDYN AEIPFEKRPP SGFYDTVGED RPLEHVQFPT TIEELEGKRR ADIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT KRSKLMLPPP
301: QISDHELEEI AKMGNAGDPA LADELGEGSA ATRTLLASYS QTPRLGMTPL RTPQRTPAGK GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR
401: KKEIQTPNPM ATPLASPGPG ITPRIGMTPS REGHSFGLTP RGTPFRDELR INEEVEMQDS TKLELRRQAE LKKSLRSGFA SIPQPKNEYQ IVMPPITEDE
501: KEEAEEKIEE DMSDRLARER AEEQARHEVL LRKRSKVLQR SLPRPPAASV EIIWQSLIRS GESRSRSTFV PPTSLEQADE LINEELFRLL EHDNAKYPLD
601: EKTQKEKKKG SKRQQNGGPL VPEIEDFDED ELKEASSMVE EEIQYLRVAM GHENESFEDF VKAHDACQED LMFFPTNNSY GLASVSGNAD KVSALQNEFE
701: TVKKRMDDEA KKASRLEQKI KLLTQGYQVR SGKLWSQVQD TFKQMDTAAT ELGCFQELQK QEHLAASYRI LNLTEEVNKQ KALERTLQSR YGELVSGFQR
801: IEEQLEEHKK QLKVQEAIEA ENRAQEEEVA APNHAAEEED ERKPPSFEEK SQQTSRATDE EAAGSKGTTE DQMDVNSGNG DGGVVGPIPP TPNTEGDDDE
901: VSIQESASNT QSSDCTSTKD GADKIDQAKL EGQDKSDDSM AVDAGPREES KDELVPVGAS ISEENTMVPS DQAVSKEDEG MAP

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.