CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93338
EES01406
EES15997
EES19859
KXG22678
KXG32187
KXG34025
OQU86087

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15900.1	EES15997	AT1G09770.1	17575050
AT4G15900.1	KXG34025	AT1G09770.1	17575050
AT4G15900.1	EES01406	AT3G29160.1	10220464
AT4G15900.1	EES19859	AT3G29160.1	10220464
AT4G15900.1	KXG32187	AT4G02150.1	9765207
AT4G15900.1	KXG22678	AT4G05420.1	18223036
AT4G15900.1	EER93338	AT5G46210.1	18223036
AT4G15900.1	OQU86087	AT5G58720.1	10220464

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033309_P003	Maize	cytosol	96.03	95.24
Os03t0339100-01	Rice	nucleus	90.4	91.74
TraesCS3D01G181100.1	Wheat	cytosol	90.19	90.19
TraesCS3B01G205300.1	Wheat	cytosol	89.98	89.98
GSMUA_Achr8P10200_001	Banana	cytosol	16.7	89.89
GSMUA_Achr8P10210_001	Banana	cytosol	17.75	89.47
TraesCS3A01G175600.2	Wheat	plastid	88.94	89.12
CDY27174	Canola	cytosol	25.26	79.08
HORVU3Hr1G035450.7	Barley	mitochondrion	84.34	78.91
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	79.75	78.6
KRH12069	Soybean	nucleus	75.37	75.84
KRH37088	Soybean	nucleus	75.37	75.68
VIT_05s0077g02310.t01	Wine grape	cytosol	75.16	74.38
Bra012753.1-P	Field mustard	cytosol	74.11	73.8
PGSC0003DMT400023040	Potato	mitochondrion	46.35	72.31
AT4G15900.1	Thale cress	cytosol	73.28	72.22
Bra007287.1-P	Field mustard	cytosol	58.66	70.25
CDY44171	Canola	cytosol	22.34	69.03
AT3G16650.1	Thale cress	cytosol	67.22	67.22
Bra021188.1-P	Field mustard	cytosol	67.64	65.19
Solyc09g010620.1.1	Tomato	cytosol	21.09	61.96
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	35.7	61.96
OQU91075	Sorghum	cytosol	14.61	21.94
KXG36525	Sorghum	plastid	14.61	21.28
EES05216	Sorghum	cytosol	13.36	21.12
EER90141	Sorghum	plastid	13.57	18.95
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	15.66	18.84
EES18812	Sorghum	cytosol	16.91	16.91
KXG37566	Sorghum	plastid	14.82	12.35
EES04226	Sorghum	nucleus	15.45	10.36
OQU87670	Sorghum	cytosol	15.87	9.13
OQU91573	Sorghum	plastid	15.03	8.24
KXG27434	Sorghum	cytosol	15.03	7.83

Protein Annotations

MapMan:16.4.5.1.3	Gene3D:2.130.10.10	UniProt:A0A1B6PJI0	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG25821	ProteinID:KXG25821
ProteinID:KXG25821.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19923	SMART:SM00320	EnsemblPlantsGene:SORBI_3006G017000	SUPFAM:SSF50978	UniParc:UPI000220714D	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:2673696..2680968

Molecular Weight (calculated)

52672.7 Da

IEP (calculated)

9.350

GRAVY (calculated)

-0.404

Length

479 amino acids

Sequence
(BLAST)

001: MATTAAADGP PVEPQSLKKL SLRSLKRSLD LFAPAHALLF TPDAESKRIR TGCKVRAEYG AVKDLPPEQG RGGQGKGSAP TSSTALALPG TQDTKDGHRE
101: GTSNAIVPVP LMLPKAPEST IPGKNTTMSI PGSSDRFSTS ALMERIPSRW PRPTWHAPWK NYRVISGHLG WVRSIAFDPG NEWFCTGSAD RTIKIWDLAS
201: GTLKLTLTGH IEQIRGLAVS QRHTYLFSAG DDKQVKCWDL EQNKVIRSYH GHLSGVYCLA LHPTIDILLT GGRDSVCRVW DIRTKAHVSA LTGHDNTVCS
301: VFARPTDPQV VTGSHDTTIK FWDLVAGRTM CTLTHHKKSV RAMALHPKEK AFASASADNI KKFSLPRGEF LHNMLSQQKT IINSMAVNED GVLATGGDNG
401: SLWFWDWKSG HNFQQDQTIV QPGSLESEAC IYALAYDASG SRLVTCEADK TIKMWKEDLT ATPETHPINF KPPKDIRRY

Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)

001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF

Arabidopsis Description

PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.