Factsheet for VIT_05s0077g02310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g06590.t01
VIT_07s0005g01100.t01
VIT_10s0003g03710.t01
VIT_10s0003g04360.t01
VIT_14s0036g00510.t01
VIT_14s0108g01230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15900.1	VIT_14s0036g00510.t01	AT1G09770.1	17575050
AT4G15900.1	VIT_14s0108g01230.t01	AT3G29160.1	10220464
AT4G15900.1	VIT_07s0005g01100.t01	AT4G02150.1	9765207
AT4G15900.1	VIT_10s0003g04360.t01	AT4G05420.1	18223036
AT4G15900.1	VIT_10s0003g03710.t01	AT5G46210.1	18223036
AT4G15900.1	VIT_06s0004g06590.t01	AT5G58720.1	10220464

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P10200_001	Banana	cytosol	16.32	88.76
GSMUA_Achr8P10210_001	Banana	cytosol	17.36	88.42
KRH12069	Soybean	nucleus	83.88	85.29
KRH37088	Soybean	nucleus	83.06	84.28
CDX72090	Canola	mitochondrion	58.06	84.13
Bra012753.1-P	Field mustard	cytosol	78.72	79.21
CDY09730	Canola	cytosol	78.72	79.21
CDX90556	Canola	cytosol	78.51	79.0
AT4G15900.1	Thale cress	cytosol	77.48	77.16
Os03t0339100-01	Rice	nucleus	75.0	76.91
TraesCS3D01G181100.1	Wheat	cytosol	75.62	76.41
TraesCS3B01G205300.1	Wheat	cytosol	75.41	76.2
TraesCS3A01G175600.2	Wheat	plastid	75.21	76.15
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	76.24	75.93
PGSC0003DMT400023040	Potato	mitochondrion	48.14	75.9
Bra007287.1-P	Field mustard	cytosol	62.19	75.25
KXG25821	Sorghum	cytosol	74.38	75.16
CDY34965	Canola	cytosol	72.73	74.89
CDY28352	Canola	cytosol	73.35	74.42
Zm00001d033309_P003	Maize	cytosol	73.97	74.12
AT3G16650.1	Thale cress	cytosol	71.9	72.65
Bra021188.1-P	Field mustard	cytosol	72.93	71.03
Solyc09g010620.1.1	Tomato	cytosol	22.93	68.1
HORVU3Hr1G035450.7	Barley	mitochondrion	71.28	67.38
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	36.57	64.13
VIT_07s0151g00960.t01	Wine grape	cytosol	14.05	21.59
VIT_09s0002g01580.t01	Wine grape	cytosol	13.22	21.4
VIT_07s0205g00150.t01	Wine grape	cytosol	13.64	21.09
VIT_18s0164g00020.t01	Wine grape	nucleus	16.53	20.46
VIT_11s0016g02220.t01	Wine grape	cytosol	16.12	19.85
VIT_05s0094g00800.t01	Wine grape	cytosol	12.4	17.44
VIT_13s0064g00360.t01	Wine grape	nucleus	16.94	17.19
VIT_13s0064g00330.t01	Wine grape	extracellular	3.93	14.5
VIT_17s0000g09750.t01	Wine grape	cytosol	13.64	12.74
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	13.64	12.67
VIT_13s0019g00220.t01	Wine grape	nucleus	16.12	10.09
VIT_10s0071g01150.t01	Wine grape	cytosol	15.91	9.66
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	3.31	5.42
VIT_00s1397g00010.t01	Wine grape	cytosol	2.89	4.13

Protein Annotations

EntrezGene:100248018	wikigene:100248018	MapMan:16.4.5.1.3	Gene3D:2.130.10.10	ProteinID:CBI22998	ProteinID:CBI22998.3
UniProt:D7SYE1	EMBL:FN595246	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005662	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071011
GO:GO:0071013	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100248018
wikigene:LOC100248018	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19923	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC58102	TIGR:TC62661	UniParc:UPI0001BE1F21
ArrayExpress:VIT_05s0077g02310	EnsemblPlantsGene:VIT_05s0077g02310	EnsemblPlants:VIT_05s0077g02310.t01	unigene:Vvi.25171	unigene:Vvi.25498	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002262991	RefSeq:XP_002262991.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:1814628..1837355

Molecular Weight (calculated)

53577.6 Da

IEP (calculated)

9.662

GRAVY (calculated)

-0.515

Length

484 amino acids

Sequence
(BLAST)

001: MPGPTVEMEP VEPQSLKKLS FKSLKRALDL FSPIHGHFAP PDPESKKIRL SHKIQLEYGG IKSATNPNQA NSTQPDGNSQ ASAPSNALAL PGTENSKDPQ
101: TGGTQNALVV GPSVQQKGLN DVGHLGKSTA VVSSSGPSER NLSTSAIMER IPSKWPRPVW RPPWRNYRVI SGHLGWVRSI AFDPSNSWFC TGSADRTIKI
201: WDVGSGRLKL TLTGHIEQIR GLAVSNKHTY MFSAGDDKQV KCWDLEQNKV IRSYHGHLSG VYCLALHPTI DILLTGGRDS VCRVWDIRSK MQIHALSGHD
301: NTVCSVFTRP TDPQVVTGSH DTTIKFWDLR YGKTMATLTH HKKSVRAMAL HPKEHTFASA SADNIKKFNL PKGEFLHNML SQQKTIINAM AVNEEGVMAT
401: AGDNGSMWFW DWKSGHNFQQ AQTIVQPGSL DSEAGIYALS YDLTGSRLVT CEADKTIKMW KEDENATPET HPLNFKPPKD IRRF

Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)

001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF

Arabidopsis Description

PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.