Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g091790.2.1 | Tomato | cytosol, nucleus | 83.07 | 82.8 |
| PGSC0003DMT400078695 | Potato | cytosol | 82.75 | 82.48 |
| KRH50874 | Soybean | nucleus | 82.11 | 78.12 |
| KRH02239 | Soybean | nucleus | 80.83 | 76.44 |
| AT3G49660.1 | Thale cress | cytosol | 75.4 | 74.45 |
| GSMUA_Achr2P08580_001 | Banana | cytosol | 67.09 | 73.94 |
| CDX86957 | Canola | cytosol | 71.57 | 71.79 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 71.89 | 71.43 |
| Bra019610.1-P | Field mustard | plastid | 71.57 | 70.66 |
| GSMUA_Achr4P10720_001 | Banana | cytosol, plastid | 73.16 | 67.95 |
| OQU91075 | Sorghum | cytosol | 68.69 | 67.4 |
| Zm00001d033849_P002 | Maize | extracellular, nucleus | 67.73 | 66.46 |
| TraesCS4B01G056500.1 | Wheat | cytosol | 68.37 | 66.25 |
| TraesCS4D01G056800.1 | Wheat | cytosol | 67.73 | 66.25 |
| Os03t0725400-02 | Rice | cytosol | 68.37 | 66.05 |
| TraesCS4A01G258000.1 | Wheat | cytosol | 67.73 | 65.63 |
| VIT_07s0151g00960.t01 | Wine grape | cytosol | 64.54 | 64.13 |
| HORVU4Hr1G009500.1 | Barley | cytosol, plastid | 67.73 | 61.1 |
| VIT_09s0002g01580.t01 | Wine grape | cytosol | 26.84 | 28.09 |
| VIT_05s0094g00800.t01 | Wine grape | cytosol | 26.84 | 24.42 |
| VIT_13s0064g00330.t01 | Wine grape | extracellular | 8.95 | 21.37 |
| VIT_13s0064g00360.t01 | Wine grape | nucleus | 30.99 | 20.34 |
| VIT_11s0016g02220.t01 | Wine grape | cytosol | 24.28 | 19.34 |
| VIT_18s0164g00020.t01 | Wine grape | nucleus | 23.96 | 19.18 |
| VIT_17s0000g09750.t01 | Wine grape | cytosol | 25.56 | 15.44 |
| VIT_05s0077g02310.t01 | Wine grape | cytosol | 21.09 | 13.64 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 20.13 | 12.09 |
| VIT_13s0019g00220.t01 | Wine grape | nucleus | 23.0 | 9.31 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 23.0 | 9.03 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 5.75 | 5.31 |
| VIT_00s1406g00010.t01 | Wine grape | cytosol, mitochondrion, nucleus | 3.51 | 3.73 |
Protein Annotations
| EntrezGene:100854719 | wikigene:100854719 | MapMan:12.3.3.2.3 | Gene3D:2.130.10.10 | ProteinID:CBI18611 | ProteinID:CBI18611.3 |
| UniProt:D7SSH8 | EMBL:FN594978 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003774 | GO:GO:0003777 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0007018 |
| GO:GO:0007275 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010228 |
| GO:GO:0016787 | GO:GO:0042393 | GO:GO:0048188 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| EntrezGene:LOC100854719 | wikigene:LOC100854719 | PFAM:PF00400 | PIRSF:PIRSF002394 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22847 | PANTHER:PTHR22847:SF602 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0001BE1416 | ArrayExpress:VIT_07s0205g00150 | EnsemblPlantsGene:VIT_07s0205g00150 | EnsemblPlants:VIT_07s0205g00150.t01 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_003632482 | RefSeq:XP_003632482.1 | SEG:seg |
Description
No Description!
Coordinates
chr7:+:15246136..15252126
Molecular Weight (calculated)
34440.5 Da
IEP (calculated)
7.296
GRAVY (calculated)
-0.280
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDPSEFIT PYKLKQTLTA HKRAVSAVKF SSDGLLLGSS SADKTLRTWS TSGDFSTLQE FHGHDQGISD LAFSSDSRHV CSASDDKTVR LWDVETGSLI
101: KTLQGHTNHV FCVNFNPQSN MIVSGSFDET VRVWDVKTGK CLKVLPAHSD PVTAANFNRD GSLIVSSSYD GLCRIWDAST GHCMKTLIDD ENPPVSFVKF
201: SPNGKFILVG TLDNTLRLWN FSTGKFLKTY TGHVNSKYCI SSTFSVTNGK YIVGGSEDNC VYLWELQTRK IVQKLEGHTD TVISVSCHPS QNMIASGALG
301: SDKTVKIWTQ ERD
101: KTLQGHTNHV FCVNFNPQSN MIVSGSFDET VRVWDVKTGK CLKVLPAHSD PVTAANFNRD GSLIVSSSYD GLCRIWDAST GHCMKTLIDD ENPPVSFVKF
201: SPNGKFILVG TLDNTLRLWN FSTGKFLKTY TGHVNSKYCI SSTFSVTNGK YIVGGSEDNC VYLWELQTRK IVQKLEGHTD TVISVSCHPS QNMIASGALG
301: SDKTVKIWTQ ERD
001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE
Arabidopsis Description
WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.