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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • plastid 3
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH02239 Soybean nucleus 95.74 95.17
VIT_07s0205g00150.t01 Wine grape cytosol 78.12 82.11
Solyc02g091790.2.1 Tomato cytosol, nucleus 75.99 79.62
PGSC0003DMT400078695 Potato cytosol 75.68 79.3
AT3G49660.1 Thale cress cytosol 71.73 74.45
CDX86957 Canola cytosol 67.48 71.15
CDY00226 Canola cytosol, nucleus, plastid 67.17 70.16
Bra019610.1-P Field mustard plastid 67.17 69.72
GSMUA_Achr2P08580_001 Banana cytosol 59.88 69.37
OQU91075 Sorghum cytosol 66.57 68.65
TraesCS4D01G056800.1 Wheat cytosol 65.96 67.81
Zm00001d033849_P002 Maize extracellular, nucleus 65.35 67.4
TraesCS4A01G258000.1 Wheat cytosol 65.96 67.18
TraesCS4B01G056500.1 Wheat cytosol 65.65 66.87
Os03t0725400-02 Rice cytosol 64.13 65.12
GSMUA_Achr4P10720_001 Banana cytosol, plastid 66.26 64.69
HORVU4Hr1G009500.1 Barley cytosol, plastid 65.65 62.25
KRH32024 Soybean cytosol 56.53 58.31
KRH71413 Soybean nucleus 55.62 57.19
KRH59511 Soybean cytosol, nucleus 27.66 30.33
KRH43376 Soybean nucleus 27.66 28.35
KRH06660 Soybean nucleus 27.36 26.09
KRG94875 Soybean nucleus 27.36 26.09
KRH35009 Soybean cytosol 9.73 23.19
KRH08668 Soybean nucleus 31.31 21.46
KRH70275 Soybean nucleus 31.0 21.25
KRG91764 Soybean cytoskeleton, cytosol, nucleus 24.62 20.72
KRH21524 Soybean cytosol 13.68 20.0
KRH37298 Soybean cytosol 20.97 18.21
KRH55267 Soybean cytosol 6.99 16.2
KRH57171 Soybean cytosol 22.49 14.4
KRH12069 Soybean nucleus 20.36 14.08
KRH03886 Soybean nucleus 21.88 14.01
KRH37088 Soybean nucleus 19.76 13.63
KRH13395 Soybean nucleus 23.1 10.64
KRH20750 Soybean nucleus 23.1 10.61
KRH35010 Soybean nucleus 5.17 10.56
KRG93160 Soybean cytosol 20.67 8.96
KRH56498 Soybean cytosol 20.67 8.96
KRH20528 Soybean cytosol 19.45 8.23
KRH49977 Soybean cytosol 15.81 7.59
KRH10790 Soybean cytosol 18.84 7.52
KRH21526 Soybean cytosol, peroxisome 5.17 2.84
Protein Annotations
EntrezGene:100785519MapMan:12.3.3.2.3Gene3D:2.130.10.10EMBL:ACUP02004716InterPro:G-protein_beta_WD-40_repEnsemblPlantsGene:GLYMA_07G248900
GO:GO:0003674GO:GO:0005488GO:GO:0005515UniProt:I1KN08InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986EnsemblPlants:KRH50874ProteinID:KRH50874ProteinID:KRH50874.1PFAM:PF00400PIRSF:PIRSF002394
PRINTS:PR00320ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR22847PANTHER:PTHR22847:SF560
SMART:SM00320SUPFAM:SSF50978UniParc:UPI0002338C29InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CS
InterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfInterPro:WDR5SEG:seg::
Description
hypothetical protein
Coordinates
chr7:-:42712300..42715144
Molecular Weight (calculated)
36106.2 Da
IEP (calculated)
6.415
GRAVY (calculated)
-0.293
Length
329 amino acids
Sequence
(BLAST)
001: MSTEAAARES LDSDSMKPNY ILSQTLSGHK RAISAVKFSS NGRLLASSAA DKTLRTYGFT NSDSDSDSLT LSPMQEYEGH EQGVSDLAFS SDSRFLVSAS
101: DDKTLRLWDV PTGSLIKTLH GHTNYVFCVN FNPQSNIIVS GSFDETVRVW DVKSGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDASTGHCM
201: KTLIDDENPP VSFVKFSPNA KFILVGTLDN TLRLWNYSTG KFLKTYTGHV NSKYCISSTF SITNGKYIVG GSEDNCIYLW DLQSRKIVQK LEGHSDAVVS
301: VSCHPTENMI ASGALGNDNT VKIWTQQKD
Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)
001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE
Arabidopsis Description
WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.